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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31467-RA through 18771 annotations produced 1 hits



(CG31467):

Annotation Number : CG31467
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051467
Gbrowse : chr3R:6531013-6532456 (-) // 100.0 //
Probeset : 1632883_at
Accessions : protein= NP_731492;, nucleotide= NM_169353;
FlyMine data for FBgn0051467.
VDRC has 4 RNAi stocks for FBgn0051467 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain20 ± 14 of 4 0.90None
Head11 ± 13 of 4 0.50Down
Eye8 ± 10 of 4 0.38Down
Thoracicoabdominal ganglion17 ± 04 of 4 0.70None
Salivary gland14 ± 30 of 4 0.63None
Crop6 ± 10 of 4 0.30Down
Midgut13 ± 14 of 4 0.60Down
Tubule20 ± 13 of 4 0.80Down
Hindgut11 ± 04 of 4 0.50Down
Heart2 ± 10 of 4 0.10Down
Fat body11 ± 03 of 4 0.47Down
Ovary6 ± 02 of 4 0.30Down
Testis266 ± 44 of 411.30Up
Male accessory glands15 ± 21 of 4 0.60Down
Virgin spermatheca9 ± 12 of 4 0.41Down
Mated spermatheca12 ± 11 of 4 0.54Down
Adult carcass11 ± 10 of 4 0.50Down
Larval CNS27 ± 24 of 4 1.18None
Larval Salivary gland13 ± 13 of 4 0.58Down
Larval midgut12 ± 10 of 4 0.51Down
Larval tubule8 ± 03 of 4 0.40Down
Larval hindgut10 ± 14 of 4 0.46Down
Larval fat body57 ± 253 of 4 2.40None
Larval trachea11 ± 53 of 4 0.49Down
Larval carcass13 ± 03 of 4 0.56Down
S2 cells (growing)10 ± 14 of 4 0.45Down
Whole fly23 ± 24 of 4

Looking for CG31467-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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