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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31473-RA through 18771 annotations produced 1 hits



(CG31473):

Annotation Number : CG31473
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051473
Gbrowse : chr3R:3637535-3638733 (+) // 100.0 //
Probeset : 1628448_at
Accessions : protein= NP_731188;, nucleotide= NM_169196;
Interpro : 0004733 // pyridoxamine-phosphate oxidase activity // inferred from sequence or structural similarity /// 0004733 // pyr
FlyMine data for FBgn0051473.
Homophila reports that CG31473 is a close match (2e-17) to human gene PNPO (NP_060599), a gene associated with Pyridoxamine 5'-phosphate oxidase deficiency, 610090 (3).
VDRC has 2 RNAi stocks for FBgn0051473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 13 of 4 0.10Down
Head9 10 of 4 0.10Down
Eye6 11 of 4 0.05Down
Thoracicoabdominal ganglion11 10 of 4 0.10Down
Salivary gland15 40 of 4 0.13Down
Crop22 34 of 4 0.20Down
Midgut7 20 of 4 0.10Down
Tubule8 10 of 4 0.10Down
Hindgut9 20 of 4 0.10Down
Heart6 12 of 4 0.06Down
Fat body9 40 of 4 0.09Down
Ovary4 10 of 4 0.00Down
Testis1019 274 of 4 9.10Up
Male accessory glands1 00 of 4 0.00Down
Virgin spermatheca14 12 of 4 0.12Down
Mated spermatheca12 21 of 4 0.11Down
Adult carcass6 30 of 4 0.10Down
Larval CNS19 24 of 4 0.17Down
Larval Salivary gland7 10 of 4 0.07Down
Larval midgut5 10 of 4 0.05Down
Larval tubule6 10 of 4 0.10Down
Larval hindgut6 10 of 4 0.06Down
Larval fat body83 353 of 4 0.70None
Larval trachea40 94 of 4 0.36Down
Larval carcass16 00 of 4 0.14Down
S2 cells (growing)3 00 of 4 0.03Down
Whole fly111 74 of 4

Looking for CG31473-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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