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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31475-RA through 18771 annotations produced 1 hits



(CG31475):

Annotation Number : CG31475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051475
Gbrowse : chr3R:15006382-15026820 (+) // 100.0 //
Probeset : 1629277_at
Accessions : protein= NP_732406;, nucleotide= NM_169851;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0051475.
BioGrid reports that CG31475 interacts with CG5180 .
VDRC has 1 RNAi stocks for FBgn0051475 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain224 ± 24 of 417.30Up
Head56 ± 34 of 4 4.40Up
Eye25 ± 04 of 4 1.98Up
Thoracicoabdominal ganglion206 ± 34 of 415.90Up
Salivary gland5 ± 30 of 4 0.43None
Crop4 ± 10 of 4 0.30Down
Midgut2 ± 10 of 4 0.20Down
Tubule4 ± 10 of 4 0.30Down
Hindgut8 ± 10 of 4 0.60None
Heart7 ± 11 of 4 0.56Down
Fat body3 ± 10 of 4 0.28Down
Ovary3 ± 10 of 4 0.20Down
Testis26 ± 24 of 4 2.00Up
Male accessory glands42 ± 64 of 4 3.30Up
Virgin spermatheca5 ± 00 of 4 0.45Down
Mated spermatheca4 ± 10 of 4 0.35Down
Adult carcass16 ± 51 of 4 1.30None
Larval CNS52 ± 24 of 4 4.04Up
Larval Salivary gland30 ± 24 of 4 2.36Up
Larval midgut3 ± 10 of 4 0.23Down
Larval tubule3 ± 10 of 4 0.30Down
Larval hindgut16 ± 24 of 4 1.27None
Larval fat body11 ± 21 of 4 0.90None
Larval trachea149 ± 234 of 411.52Up
Larval carcass207 ± 154 of 415.97Up
S2 cells (growing)4 ± 00 of 4 0.33Down
Whole fly13 ± 12 of 4

Looking for CG31475-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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