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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31477-RA through 18771 annotations produced 1 hits



ATP synthase Epsilon chain (CG31477):

Annotation Number : CG31477
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051477
Gbrowse : chr3R:5947747-5947942 (+) // 100.0 //
Probeset : 1636925_at
Accessions : protein= NP_001097736; /// NP_731449;, nucleotide= NM_001104266; /// NM_169328;
Pathway : "0000275 // mitochondrial proton-transporting ATP synthase complex
Interpro : catalytic core F(1) // inferred from sequence or structural similarity /// 0000275 // mitochondrial proton-transporting
FlyMine data for FBgn0051477.
VDRC has 4 RNAi stocks for FBgn0051477 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 ± 11 of 4 0.30Down
Head16 ± 31 of 4 0.70None
Eye5 ± 20 of 4 0.22Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.10Down
Salivary gland15 ± 70 of 4 0.64None
Crop18 ± 20 of 4 0.80None
Midgut12 ± 20 of 4 0.50Down
Tubule11 ± 00 of 4 0.50Down
Hindgut29 ± 13 of 4 1.20None
Heart3 ± 10 of 4 0.13Down
Fat body12 ± 50 of 4 0.51Down
Ovary7 ± 10 of 4 0.30Down
Testis188 ± 34 of 4 7.80Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca6 ± 10 of 4 0.25Down
Mated spermatheca7 ± 20 of 4 0.32Down
Adult carcass20 ± 60 of 4 0.90None
Larval CNS15 ± 23 of 4 0.66Down
Larval Salivary gland5 ± 20 of 4 0.24Down
Larval midgut11 ± 20 of 4 0.49Down
Larval tubule3 ± 00 of 4 0.10Down
Larval hindgut39 ± 54 of 4 1.65None
Larval fat body70 ± 124 of 4 2.90Up
Larval trachea27 ± 24 of 4 1.14None
Larval carcass15 ± 10 of 4 0.64Down
S2 cells (growing)18 ± 11 of 4 0.77None
Whole fly24 ± 24 of 4

Looking for CG31477-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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