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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31478-RA through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L9 (mRpL9):

Annotation Number : CG31478
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038319
Gbrowse : chr3R:11156461-11157310 (+) // 99.5 //
Probeset : 1640252_at
Accessions : protein= NP_524363;, nucleotide= NM_079639;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0038319.
BDGP gene expression has embryonic in situ data for mRpL9: 13 pix of staining in 15 body parts.
BioGrid reports that CG31478 interacts with CG6667 .
VDRC has 2 RNAi stocks for FBgn0038319 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain166 64 of 4 0.80None
Head160 64 of 4 0.80Down
Eye141 64 of 4 0.69Down
Thoracicoabdominal ganglion189 74 of 4 0.90None
Salivary gland177 84 of 4 0.86None
Crop157 54 of 4 0.80Down
Midgut189 44 of 4 0.90None
Tubule122 14 of 4 0.60Down
Hindgut190 34 of 4 0.90None
Heart144 14 of 4 0.70Down
Fat body144 154 of 4 0.70Down
Ovary309 94 of 4 1.50Up
Testis57 14 of 4 0.30Down
Male accessory glands246 44 of 4 1.20Up
Virgin spermatheca172 64 of 4 0.84Down
Mated spermatheca174 104 of 4 0.85None
Adult carcass168 64 of 4 0.80Down
Larval CNS209 194 of 4 1.02None
Larval Salivary gland285 104 of 4 1.39Up
Larval midgut144 84 of 4 0.70Down
Larval tubule120 34 of 4 0.60Down
Larval hindgut189 84 of 4 0.92None
Larval fat body74 84 of 4 0.40Down
Larval trachea207 124 of 4 1.01None
Larval carcass173 104 of 4 0.84None
S2 cells (growing)117 24 of 4 0.57Down
Whole fly206 94 of 4

Looking for CG31478-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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