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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3149-RA through 18771 annotations produced 1 hits



(CG3149):

Annotation Number : CG3149
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027564
Gbrowse : chrX:5586977-5589239 (-) // 100.0 //
Probeset : 1639993_at
Accessions : protein= NP_572246;, nucleotide= NM_132018;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005319 // lipid transporter activity // inferred from electronic annotation
FlyMine data for FBgn0027564.
Homophila reports that CG3149 is a close match (5e-62) to human gene CDG1N;RFT1 (NP_443091), a gene associated with Congenital disorder of glycosylation, type In, 612015 (3).
BioGrid reports that CG3149 interacts with CG6576 .
VDRC has 3 RNAi stocks for FBgn0027564 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain146 ± 74 of 4 1.90Up
Head85 ± 44 of 4 1.10None
Eye71 ± 24 of 4 0.92None
Thoracicoabdominal ganglion185 ± 54 of 4 2.40Up
Salivary gland285 ± 64 of 4 3.67Up
Crop88 ± 34 of 4 1.10None
Midgut226 ± 44 of 4 2.90Up
Tubule269 ± 154 of 4 3.50Up
Hindgut124 ± 44 of 4 1.60Up
Heart105 ± 54 of 4 1.36Up
Fat body112 ± 114 of 4 1.45Up
Ovary76 ± 24 of 4 1.00None
Testis72 ± 14 of 4 0.90None
Male accessory glands133 ± 54 of 4 1.70Up
Virgin spermatheca129 ± 24 of 4 1.66Up
Mated spermatheca154 ± 54 of 4 1.98Up
Adult carcass113 ± 14 of 4 1.50Up
Larval CNS83 ± 54 of 4 1.07None
Larval Salivary gland193 ± 224 of 4 2.49Up
Larval midgut199 ± 74 of 4 2.57Up
Larval tubule185 ± 34 of 4 2.40Up
Larval hindgut106 ± 34 of 4 1.37Up
Larval fat body118 ± 124 of 4 1.50Up
Larval trachea64 ± 54 of 4 0.83None
Larval carcass89 ± 44 of 4 1.15None
S2 cells (growing)164 ± 54 of 4 2.12Up
Whole fly77 ± 64 of 4

Looking for CG3149-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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