Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31496-RA through 18771 annotations produced 1 hits


(CG31496):

Annotation Number : CG31496
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051496
Gbrowse : chr3R:3170934-3172000 (+) // 100.0 //
Probeset : 1628103_at
Accessions : protein= NP_731155;, nucleotide= NM_169182;
FlyMine data for FBgn0051496.
VDRC has 2 RNAi stocks for FBgn0051496 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland16 ± 50 of 4 0.26Down
Crop3 ± 10 of 4 0.10Down
Midgut10 ± 20 of 4 0.20Down
Tubule3 ± 00 of 4 0.10Down
Hindgut5 ± 20 of 4 0.10Down
Heart2 ± 10 of 4 0.05Down
Fat body7 ± 30 of 4 0.13Down
Ovary2 ± 00 of 4 0.00Down
Testis11 ± 40 of 4 0.20Down
Male accessory glands4663 ± 2104 of 476.40Up
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca2 ± 00 of 4 0.04Down
Adult carcass6 ± 20 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.06Down
Larval Salivary gland4845 ± 904 of 479.41Up
Larval midgut7 ± 10 of 4 0.12Down
Larval tubule2 ± 10 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.08Down
Larval fat body16 ± 30 of 4 0.30Down
Larval trachea13 ± 110 of 4 0.22Down
Larval carcass5 ± 10 of 4 0.09Down
S2 cells (growing)5 ± 10 of 4 0.08Down
Whole fly61 ± 61 of 4

Looking for CG31496-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime