Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31522-RB through 18771 annotations produced 1 hits



(CG31522):

Annotation Number : CG31522
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051522
Gbrowse : chr3R:267136-279036 (-) // 100.0 //
Probeset : 1624109_s_at
Accessions : protein= NP_730841; /// NP_730842; /// NP_730843; /// NP_730844;, nucleotide= NM_169001; /// NM_169002; /// NM_169003; /// NM_169004;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0051522.
BDGP gene expression has embryonic in situ data for CG31522: 17 pix of staining in 8 body parts.
Homophila reports that CG31522 is a close match (1e-58) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
TRiP has 1 RNAi stocks for FBgn0051522 available for purchase.
VDRC has 3 RNAi stocks for FBgn0051522 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain434 104 of 4 1.10None
Head531 324 of 4 1.30Up
Eye295 204 of 4 0.73Down
Thoracicoabdominal ganglion501 154 of 4 1.20None
Salivary gland255 74 of 4 0.63Down
Crop5510 2624 of 413.50Up
Midgut880 444 of 4 2.20Up
Tubule424 464 of 4 1.00None
Hindgut2773 1644 of 4 6.80Up
Heart159 124 of 4 0.39Down
Fat body118 64 of 4 0.29Down
Ovary53 104 of 4 0.10Down
Testis26 24 of 4 0.10Down
Male accessory glands312 244 of 4 0.80None
Virgin spermatheca110 64 of 4 0.27Down
Mated spermatheca164 64 of 4 0.41Down
Adult carcass275 124 of 4 0.70Down
Larval CNS489 134 of 4 1.20None
Larval Salivary gland101 124 of 4 0.25Down
Larval midgut289 134 of 4 0.71Down
Larval tubule133 144 of 4 0.30Down
Larval hindgut988 404 of 4 2.43Up
Larval fat body610 624 of 4 1.50Up
Larval trachea985 714 of 4 2.42Up
Larval carcass659 394 of 4 1.62Up
S2 cells (growing)303 134 of 4 0.75Down
Whole fly407 334 of 4

Looking for CG31522-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime