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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31523-RC through 18771 annotations produced 1 hits



(CG31523):

Annotation Number : CG31523
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051523
Gbrowse : chr3R:291142-304828 (-) // 99.86 //
Probeset : 1625257_s_at
Accessions : protein= NP_649474; /// NP_730846; /// NP_730847; /// NP_730848;, nucleotide= NM_141217; /// NM_169006; /// NM_169007; /// NM_169008;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0051523.
BDGP gene expression has embryonic in situ data for CG31523: 15 pix of staining in 19 body parts.
Homophila reports that CG31523 is a close match (1e-51) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
BioGrid reports that CG31523 interacts with CG9426 .
VDRC has 1 RNAi stocks for FBgn0051523 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain180 64 of 4 0.10Down
Head736 114 of 4 0.60Down
Eye299 44 of 4 0.23Down
Thoracicoabdominal ganglion177 194 of 4 0.10Down
Salivary gland318 164 of 4 0.25Down
Crop5029 3454 of 4 3.90Up
Midgut1351 474 of 4 1.10None
Tubule198 274 of 4 0.20Down
Hindgut3114 374 of 4 2.40Up
Heart4820 1844 of 4 3.76Up
Fat body4713 5414 of 4 3.68Up
Ovary256 184 of 4 0.20Down
Testis77 24 of 4 0.10Down
Male accessory glands180 74 of 4 0.10Down
Virgin spermatheca381 134 of 4 0.30Down
Mated spermatheca512 324 of 4 0.40Down
Adult carcass3988 1884 of 4 3.10Up
Larval CNS323 114 of 4 0.25Down
Larval Salivary gland260 44 of 4 0.20Down
Larval midgut1251 384 of 4 0.98None
Larval tubule356 154 of 4 0.30Down
Larval hindgut1112 624 of 4 0.87None
Larval fat body438 234 of 4 0.30Down
Larval trachea639 924 of 4 0.50Down
Larval carcass840 924 of 4 0.66Down
S2 cells (growing)1481 324 of 4 1.16None
Whole fly1282 1074 of 4

Looking for CG31523-RC. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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