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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31545-RA through 18771 annotations produced 1 hits



MTA-like (MTA1-like):

Annotation Number : CG31545
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027951
Gbrowse : chr3R:1472998-1473632 (-) // 100.0 //
Probeset : 1629038_at
Accessions : protein= NP_001138011; /// NP_649566; /// NP_730976;, nucleotide= NM_001144539; /// NM_141309; /// NM_169086;
Pathway : DNA-dependent // inferred from electronic annotation /// 0006911 // phagocytosis
Interpro : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0027951.
TRiP has 3 RNAi stocks for FBgn0027951 available for purchase.
VDRC has 4 RNAi stocks for FBgn0027951 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.70None
Head5 10 of 4 1.50None
Eye1 00 of 4 0.44None
Thoracicoabdominal ganglion2 10 of 4 0.80None
Salivary gland6 20 of 4 1.83None
Crop3 10 of 4 1.10None
Midgut3 10 of 4 1.00None
Tubule2 00 of 4 0.90None
Hindgut3 10 of 4 0.90None
Heart1 00 of 4 0.34None
Fat body12 12 of 4 3.62Up
Ovary0 00 of 4 0.20None
Testis1 00 of 4 0.50None
Male accessory glands4 10 of 4 1.40None
Virgin spermatheca3 10 of 4 1.06None
Mated spermatheca5 10 of 4 1.63None
Adult carcass7 20 of 4 2.20None
Larval CNS2 00 of 4 0.77None
Larval Salivary gland4 00 of 4 1.20None
Larval midgut3 10 of 4 1.08None
Larval tubule3 00 of 4 0.90None
Larval hindgut4 10 of 4 1.19None
Larval fat body4 10 of 4 1.40None
Larval trachea2 10 of 4 0.84None
Larval carcass2 10 of 4 0.74None
S2 cells (growing)3 00 of 4 1.18None
Whole fly3 10 of 4

Looking for CG31545-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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