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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3159-RA through 18771 annotations produced 1 hits



sodium-dependent excitatory amino acid transporter 2 (Eaat2):

Annotation Number : CG3159
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026438
Gbrowse : chr2L:737210-744395 (-) // 100.0 //
Probeset : 1639862_at
Accessions : protein= NP_001162844; /// NP_001162845; /// NP_477427;, nucleotide= NM_001169373; /// NM_001169374; /// NM_058079;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from e
Interpro : 0005369 // taurine:sodium symporter activity // inferred from direct assay /// 0015183 // L-aspartate transmembrane tran
FlyMine data for FBgn0026438.
BDGP gene expression has embryonic in situ data for Eaat2: 4 pix of staining in 1 body parts.
Homophila reports that CG3159 is a close match (1e-32) to human gene EA6;EAAT1;SLC1A3 (NP_004163), a gene associated with Episodic ataxia, type 6 (3).
TRiP has 1 RNAi stocks for FBgn0026438 available for purchase.
VDRC has 1 RNAi stocks for FBgn0026438 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1107 304 of 4 8.10Up
Head1250 544 of 4 9.10Up
Eye1907 1004 of 413.95Up
Thoracicoabdominal ganglion1024 144 of 4 7.50Up
Salivary gland4 20 of 4 0.03Down
Crop5 20 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart9 23 of 4 0.07Down
Fat body0 00 of 4 0.01Down
Ovary0 00 of 4 0.00Down
Testis3 00 of 4 0.00Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.01Down
Adult carcass173 124 of 4 1.30None
Larval CNS548 334 of 4 4.01Up
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut2 10 of 4 0.02Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body2 00 of 4 0.00Down
Larval trachea33 591 of 4 0.24Down
Larval carcass11 02 of 4 0.08Down
S2 cells (growing)2 00 of 4 0.02Down
Whole fly136 94 of 4

Looking for CG3159-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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