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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31611-RA through 18771 annotations produced 1 hits



His4:CG31611 /// His4:CG33869 /// His4:CG33871 /// His4:CG33873 /// His4:CG33875 /// His4:CG33877 /// His4:CG33879 /// His4:CG33881 /// His4:CG33883 /// His4:CG33885 /// His4:CG33887 /// His4:CG33889 /// His4:CG33891 /// His4:CG33893 /// His4:CG33895 /// His4:CG33897 /// His4:CG33899 /// His4:CG33901 /// His4:CG33903 /// His4:CG33905 /// His4:CG33907 /// His4:CG33909 (His4:CG31611 /// His4:CG33869 /// His4:CG33871 /// His4:CG33873 /// His4:CG33875 /// His4:CG33877 /// His4:CG33879 /// His4:CG33881 /// His4:CG33883 /// His4:CG33885 /// His4:CG33887 /// His4:CG33889 /// His4:CG33891 /// His4:CG33893 /// His4:CG33895 /// His4:CG33897 /// His4:CG33899 /// His4:CG33901 /// His4:CG33903 /// His4:CG33905 /// His4:CG33907 /// His4:CG33909):

Annotation Number : CG31611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051611 /// FBgn0053867 /// FBgn0053869 /// FBgn0053871 /// FBgn0053873 /// FBgn0053875 /// FBgn0053877 /// FBgn0053879 /// FBgn0053881 /// FBgn0053883 /// FBgn0053885 /// FBgn0053887 /// FBgn0053889 /// FBgn0053891 /// FBgn0053893 /// FBgn0053895 /// FBgn0053897 /// FBgn0053899 /// FBgn0053901 /// FBgn0053903 /// FBgn0053905 /// FBgn0053907 /// FBgn0053909
Gbrowse : chrUextra:6958599-6958981 (+) // 100.0 // /// chrUextra:13939003-13939385 (+) // 100.0 // /// chrUextra:14077535-14077917 (+) // 100.0 // /// chrUextra:15204408-15204790 (+) // 100.0 // /// chrUextra:15607012-15607394 (+) // 100.0 // /// chrUextra:21487273-21487655 (+) // 100.0 // /// chrUextra:21861759-21862141 (+) // 100.0 // /// chrUextra:14793835-14794218 (+) // 100.0 // /// chrUextra:5411126-5956521 (+) // 100.0 // /// chrUextra:8152393-8152775 (-) // 100.0 // /// chrUextra:10904637-10905019 (-) // 100.0 // /// chrUextra:11832866-11833248 (-) // 100.0 // /// chrUextra:12248689-12249071 (-) // 100.0 // /// chrUextra:12460839-12461221 (-) // 100.0 // /// chrUextra:12503713-12504095 (-) // 100.0 // /// chrUextra:12807041-12807423 (-) // 100.0 // /// chrUextra:13558217-13558599 (-) // 100.0 // /// chrUextra:13680022-13680404 (-) // 100.0 // /// chrUextra:14037898-14038280 (-) // 100.0 // /// chrUextra:16254652-16255034 (-) // 100.0 //
Probeset : 1635715_at
Accessions : protein= NP_001027284; /// NP_001027288; /// NP_001027293; /// NP_001027297; /// NP_001027302; /// NP_001027307; /// NP_001027312; /// NP_001027317; /// NP_001027322; /// NP_001027327; /// NP_001027332; /// NP_001027337; /// NP_001027342; /// NP_001027347; /// NP_001027352; /// NP_001027357; /// NP_001027362; /// NP_001027367; /// NP_001027372; /// NP_001027377; /// NP_001027382; /// NP_724344;, nucleotide= NM_001032113; /// NM_001032117; /// NM_001032122; /// NM_001032126; /// NM_001032131; /// NM_001032136; /// NM_001032141; /// NM_001032146; /// NM_001032151; /// NM_001032156; /// NM_001032161; /// NM_001032166; /// NM_001032171; /// NM_001032176; /// NM_001032181; /// NM_001032186; /// NM_001032191; /// NM_001032196; /// NM_001032201; /// NM_001032206; /// NM_001032211; /// NM_165383;
Pathway : 0000786 // nucleosome // inferred from sequence or structural similarity /// 0000786 // nucleosome // inferred from dire
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from di
FlyMine data for FBgn0051611 /// FBgn0053867 /// FBgn0053869 /// FBgn0053871 /// FBgn0053873 /// FBgn0053875 /// FBgn0053877 /// FBgn0053879 /// FBgn0053881 /// FBgn0053883 /// FBgn0053885 /// FBgn0053887 /// FBgn0053889 /// FBgn0053891 /// FBgn0053893 /// FBgn0053895 /// FBgn0053897 /// FBgn0053899 /// FBgn0053901 /// FBgn0053903 /// FBgn0053905 /// FBgn0053907 /// FBgn0053909.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain55 194 of 4 0.10Down
Head30 44 of 4 0.00Down
Eye32 14 of 4 0.04Down
Thoracicoabdominal ganglion36 104 of 4 0.00Down
Salivary gland180 214 of 4 0.21Down
Crop85 214 of 4 0.10Down
Midgut22 24 of 4 0.00Down
Tubule26 63 of 4 0.00Down
Hindgut73 34 of 4 0.10Down
Heart19 14 of 4 0.02Down
Fat body132 684 of 4 0.16Down
Ovary2049 724 of 4 2.40Up
Testis24 44 of 4 0.00Down
Male accessory glands85 264 of 4 0.10Down
Virgin spermatheca45 34 of 4 0.05Down
Mated spermatheca35 34 of 4 0.04Down
Adult carcass37 84 of 4 0.00Down
Larval CNS133 184 of 4 0.16Down
Larval Salivary gland75 74 of 4 0.09Down
Larval midgut21 42 of 4 0.03Down
Larval tubule37 44 of 4 0.00Down
Larval hindgut40 74 of 4 0.05Down
Larval fat body23 14 of 4 0.00Down
Larval trachea42 74 of 4 0.05Down
Larval carcass11 32 of 4 0.01Down
S2 cells (growing)260 114 of 4 0.31Down
Whole fly842 294 of 4

Looking for CG31611-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime