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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31612-RA through 18771 annotations produced 1 hits



(CG31612):

Annotation Number : CG31612
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051612
Gbrowse : chr2L:21762288-21795445 (-) // 100.0 //
Probeset : 1631129_at
Accessions : protein= NP_001163042; /// NP_724363;, nucleotide= NM_001169571; /// NM_165400;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or stru
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0051612.
Homophila reports that CG31612 is a close match (8e-13) to human gene ZBTB16;ZNF145;PLZF (NP_005997), a gene associated with Leukemia, acute promyelocytic, PL2F/RARA type (3).
VDRC has 3 RNAi stocks for FBgn0051612 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 14 of 4 0.80None
Head12 ± 14 of 4 0.80None
Eye22 ± 14 of 4 1.41Up
Thoracicoabdominal ganglion22 ± 14 of 4 1.40Up
Salivary gland20 ± 31 of 4 1.28None
Crop20 ± 14 of 4 1.30Up
Midgut13 ± 02 of 4 0.80Down
Tubule14 ± 03 of 4 0.90None
Hindgut16 ± 04 of 4 1.00None
Heart12 ± 14 of 4 0.78Down
Fat body18 ± 34 of 4 1.17None
Ovary37 ± 24 of 4 2.40Up
Testis3 ± 01 of 4 0.20Down
Male accessory glands18 ± 42 of 4 1.10None
Virgin spermatheca15 ± 04 of 4 0.94None
Mated spermatheca18 ± 24 of 4 1.15None
Adult carcass12 ± 21 of 4 0.70None
Larval CNS19 ± 34 of 4 1.22None
Larval Salivary gland10 ± 03 of 4 0.67Down
Larval midgut9 ± 00 of 4 0.62Down
Larval tubule13 ± 14 of 4 0.90None
Larval hindgut16 ± 14 of 4 1.03None
Larval fat body11 ± 13 of 4 0.70None
Larval trachea30 ± 34 of 4 1.90Up
Larval carcass12 ± 13 of 4 0.81None
S2 cells (growing)50 ± 14 of 4 3.12Up
Whole fly16 ± 04 of 4

Looking for CG31612-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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