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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31636-RA through 18771 annotations produced 1 hits



(CG31636):

Annotation Number : CG31636
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051636
Gbrowse : chr2L:6656669-6657738 (-) // 100.0 //
Probeset : 1630168_at
Accessions : protein= NP_723200;, nucleotide= NM_164699;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0051636.
Homophila reports that CG31636 is a close match (5e-12) to human gene AVED;TTP1;TTPA (NP_000361), a gene associated with Ataxia with isolated vitamin E deficiency, 277460 (3).
VDRC has 3 RNAi stocks for FBgn0051636 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.40None
Head18 02 of 4 3.50Up
Eye96 84 of 417.80Up
Thoracicoabdominal ganglion0 00 of 4 0.10None
Salivary gland1 00 of 4 0.25None
Crop0 00 of 4 0.20None
Midgut158 54 of 429.40Up
Tubule1 00 of 4 0.20Down
Hindgut2 10 of 4 0.40None
Heart0 00 of 4 0.06None
Fat body1 10 of 4 0.26None
Ovary0 00 of 4 0.10None
Testis7 00 of 4 1.30None
Male accessory glands1 00 of 4 0.20None
Virgin spermatheca1 00 of 4 0.27None
Mated spermatheca0 00 of 4 0.14None
Adult carcass1 00 of 4 0.30None
Larval CNS0 00 of 4 0.09None
Larval Salivary gland2 10 of 4 0.44None
Larval midgut15 40 of 4 2.77None
Larval tubule2 10 of 4 0.40None
Larval hindgut1 00 of 4 0.22None
Larval fat body728 1194 of 4134.90Up
Larval trachea1 10 of 4 0.29None
Larval carcass1 00 of 4 0.22None
S2 cells (growing)0 00 of 4 0.16None
Whole fly5 20 of 4

Looking for CG31636-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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