FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG31639-RA through 18771 annotations produced 1 hits

/// ubiquitin C-terminal hydrolase (CG31639 /// Uch-L3):

Annotation Number : CG31639
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051639
Gbrowse : chr2L:6153839-6155088 (-) // 100.0 //
Probeset : 1634244_s_at
Accessions : protein= NP_723162; /// NP_723163;, nucleotide= NM_164686; /// NM_164687;
Pathway : 0000502 // proteasome complex // inferred from electronic annotation /// 0005622 // intracellular // inferred from elect
Interpro : 0004175 // endopeptidase activity // inferred from direct assay /// 0004221 // ubiquitin thiolesterase activity // infer
FlyMine data for FBgn0051639.
BDGP gene expression has embryonic in situ data for Uch-L3: 14 pix of staining in 18 body parts.
TRiP has 1 RNAi stocks for FBgn0051639 available for purchase.
VDRC has 1 RNAi stocks for FBgn0051639 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.00	Down
Head	4 ± 3	1 of 4	0.00	Down
Eye	6 ± 2	2 of 4	0.01	Down
Thoracicoabdominal ganglion	3 ± 1	0 of 4	0.00	Down
Salivary gland	10 ± 2	0 of 4	0.01	Down
Crop	2 ± 1	0 of 4	0.00	Down
Midgut	4 ± 1	0 of 4	0.00	Down
Tubule	5 ± 1	0 of 4	0.00	Down
Hindgut	2 ± 0	0 of 4	0.00	Down
Heart	7 ± 1	1 of 4	0.01	Down
Fat body	4 ± 1	0 of 4	0.00	Down
Ovary	4 ± 1	2 of 4	0.00	Down
Testis	3176 ± 178	4 of 4	3.70	Up
Male accessory glands	11 ± 2	1 of 4	0.00	Down
Virgin spermatheca	4 ± 1	0 of 4	0.00	Down
Mated spermatheca	6 ± 2	1 of 4	0.01	Down
Adult carcass	15 ± 5	1 of 4	0.00	Down
Larval CNS	2 ± 1	1 of 4	0.00	Down
Larval Salivary gland	11 ± 1	1 of 4	0.01	Down
Larval midgut	11 ± 2	2 of 4	0.01	Down
Larval tubule	3 ± 1	0 of 4	0.00	Down
Larval hindgut	5 ± 1	1 of 4	0.01	Down
Larval fat body	546 ± 291	4 of 4	0.60	None
Larval trachea	37 ± 53	3 of 4	0.04	Down
Larval carcass	10 ± 2	2 of 4	0.01	Down
S2 cells (growing)	2 ± 0	0 of 4	0.00	Down
Whole fly	861 ± 32	4 of 4

Looking for CG31639-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720