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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31642-RA through 18771 annotations produced 1 hits



(CG31642):

Annotation Number : CG31642
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051642
Gbrowse : chr2L:6118511-6120525 (+) // 100.0 //
Probeset : 1629787_at
Accessions : protein= NP_723159;, nucleotide= NM_164685;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0051642.
TRiP has 1 RNAi stocks for FBgn0051642 available for purchase.
VDRC has 1 RNAi stocks for FBgn0051642 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 12 of 4 0.30Down
Head5 ± 11 of 4 0.30Down
Eye1 ± 00 of 4 0.06Down
Thoracicoabdominal ganglion8 ± 10 of 4 0.40Down
Salivary gland15 ± 21 of 4 0.72None
Crop7 ± 10 of 4 0.40Down
Midgut4 ± 10 of 4 0.20Down
Tubule5 ± 01 of 4 0.30Down
Hindgut7 ± 12 of 4 0.30Down
Heart5 ± 11 of 4 0.24Down
Fat body9 ± 11 of 4 0.43Down
Ovary5 ± 01 of 4 0.30Down
Testis290 ± 164 of 413.70Up
Male accessory glands8 ± 01 of 4 0.40Down
Virgin spermatheca7 ± 14 of 4 0.33Down
Mated spermatheca7 ± 13 of 4 0.35Down
Adult carcass13 ± 21 of 4 0.60None
Larval CNS4 ± 12 of 4 0.20Down
Larval Salivary gland7 ± 10 of 4 0.33Down
Larval midgut5 ± 10 of 4 0.23Down
Larval tubule6 ± 01 of 4 0.30Down
Larval hindgut5 ± 00 of 4 0.25Down
Larval fat body66 ± 244 of 4 3.10None
Larval trachea4 ± 32 of 4 0.22Down
Larval carcass5 ± 00 of 4 0.26Down
S2 cells (growing)12 ± 04 of 4 0.56Down
Whole fly21 ± 04 of 4

Looking for CG31642-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime