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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31643-RA through 18771 annotations produced 1 hits



(CG31643):

Annotation Number : CG31643
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051643
Gbrowse : chr2L:6038160-6041283 (+) // 100.0 //
Probeset : 1625745_at
Accessions : protein= NP_723145;, nucleotide= NM_164674;
Interpro : 0004672 // protein kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred fro
FlyMine data for FBgn0051643.
BDGP gene expression has embryonic in situ data for CG31643: 14 pix of staining in 8 body parts.
TRiP has 1 RNAi stocks for FBgn0051643 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain54 14 of 4 0.60Down
Head51 24 of 4 0.50Down
Eye34 24 of 4 0.35Down
Thoracicoabdominal ganglion79 24 of 4 0.80Down
Salivary gland75 14 of 4 0.76Down
Crop71 44 of 4 0.70Down
Midgut107 44 of 4 1.10None
Tubule125 94 of 4 1.30Up
Hindgut72 14 of 4 0.70Down
Heart62 34 of 4 0.64Down
Fat body68 64 of 4 0.69Down
Ovary210 44 of 4 2.10Up
Testis59 34 of 4 0.60Down
Male accessory glands74 44 of 4 0.80Down
Virgin spermatheca88 44 of 4 0.90None
Mated spermatheca101 44 of 4 1.03None
Adult carcass72 44 of 4 0.70Down
Larval CNS73 54 of 4 0.75Down
Larval Salivary gland87 64 of 4 0.89None
Larval midgut97 64 of 4 0.99None
Larval tubule94 24 of 4 1.00None
Larval hindgut97 44 of 4 0.99None
Larval fat body40 24 of 4 0.40Down
Larval trachea69 74 of 4 0.71Down
Larval carcass58 44 of 4 0.59Down
S2 cells (growing)41 14 of 4 0.42Down
Whole fly98 34 of 4

Looking for CG31643-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime