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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31646-RA through 18771 annotations produced 1 hits



(CG31646):

Annotation Number : CG31646
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051646
Gbrowse : chr2L:5626281-5658553 (-) // 100.0 //
Probeset : 1627859_at
Accessions : protein= NP_723103;, nucleotide= NM_164653;
FlyMine data for FBgn0051646.
BDGP gene expression has embryonic in situ data for CG31646: 4 pix of staining in 1 body parts.
Homophila reports that CG31646 is a close match (6e-12) to human gene KIAA1568;ROBO2;SAX3 (NP_002933), a gene associated with Vesicoureteral reflux 2, 610878 (3).
BioGrid reports that CG31646 interacts with CG4878 .
TRiP has 1 RNAi stocks for FBgn0051646 available for purchase.
VDRC has 1 RNAi stocks for FBgn0051646 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain320 124 of 440.50Up
Head72 54 of 4 9.20Up
Eye5 10 of 4 0.74None
Thoracicoabdominal ganglion291 104 of 436.70Up
Salivary gland8 30 of 4 1.06None
Crop6 11 of 4 0.90None
Midgut0 00 of 4 0.10Down
Tubule2 00 of 4 0.30Down
Hindgut2 00 of 4 0.30Down
Heart1 00 of 4 0.14Down
Fat body4 21 of 4 0.61None
Ovary0 00 of 4 0.10Down
Testis1 00 of 4 0.20Down
Male accessory glands9 10 of 4 1.20None
Virgin spermatheca3 10 of 4 0.50Down
Mated spermatheca4 10 of 4 0.52None
Adult carcass4 30 of 4 0.60None
Larval CNS166 224 of 421.03Up
Larval Salivary gland1 00 of 4 0.24Down
Larval midgut1 00 of 4 0.15Down
Larval tubule1 10 of 4 0.20Down
Larval hindgut1 00 of 4 0.24Down
Larval fat body3 00 of 4 0.40Down
Larval trachea2 10 of 4 0.26Down
Larval carcass2 10 of 4 0.31Down
S2 cells (growing)1 00 of 4 0.16Down
Whole fly7 14 of 4

Looking for CG31646-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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