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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31650-RA through 18771 annotations produced 1 hits



(CG31650):

Annotation Number : CG31650
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031673
Gbrowse : chr2L:5040638-5044008 (-) // 100.0 //
Probeset : 1628422_s_at
Accessions : protein= NP_001162879; /// NP_001162880; /// NP_001162881; /// NP_608899; /// NP_723048; /// NP_723049;, nucleotide= NM_001169408; /// NM_001169409; /// NM_001169410; /// NM_135055; /// NM_164619; /// NM_164620;
Pathway : 0005788 // endoplasmic reticulum lumen // inferred from sequence or structural similarity
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0031673.
VDRC has 2 RNAi stocks for FBgn0031673 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain744 124 of 4 3.80Up
Head289 84 of 4 1.50Up
Eye289 94 of 4 1.47Up
Thoracicoabdominal ganglion847 104 of 4 4.30Up
Salivary gland110 44 of 4 0.56Down
Crop257 84 of 4 1.30Up
Midgut68 24 of 4 0.30Down
Tubule98 34 of 4 0.50Down
Hindgut110 34 of 4 0.60Down
Heart214 94 of 4 1.08None
Fat body66 74 of 4 0.34Down
Ovary375 64 of 4 1.90Up
Testis386 94 of 4 2.00Up
Male accessory glands112 84 of 4 0.60Down
Virgin spermatheca75 14 of 4 0.38Down
Mated spermatheca90 34 of 4 0.46Down
Adult carcass178 64 of 4 0.90None
Larval CNS645 274 of 4 3.27Up
Larval Salivary gland90 54 of 4 0.46Down
Larval midgut76 24 of 4 0.39Down
Larval tubule118 34 of 4 0.60Down
Larval hindgut156 54 of 4 0.79Down
Larval fat body117 154 of 4 0.60Down
Larval trachea189 194 of 4 0.96None
Larval carcass263 174 of 4 1.33Up
S2 cells (growing)683 74 of 4 3.46Up
Whole fly197 124 of 4

Looking for CG31650-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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