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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31653-RA through 18771 annotations produced 1 hits



(CG34126):

Annotation Number : CG31653
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0083962
Gbrowse : chr2L:4983642-4987365 (+) // 100.0 //
Probeset : 1625079_at
Accessions : protein= NP_001036335;, nucleotide= NM_001042870;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation
FlyMine data for FBgn0083962.
VDRC has 4 RNAi stocks for FBgn0083962 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain17 ± 23 of 4 1.30None
Head9 ± 20 of 4 0.70None
Eye2 ± 00 of 4 0.15Down
Thoracicoabdominal ganglion14 ± 41 of 4 1.00None
Salivary gland21 ± 30 of 4 1.56None
Crop15 ± 31 of 4 1.20None
Midgut2 ± 00 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut17 ± 31 of 4 1.20None
Heart3 ± 10 of 4 0.24Down
Fat body20 ± 61 of 4 1.52None
Ovary14 ± 11 of 4 1.10None
Testis2 ± 10 of 4 0.20Down
Male accessory glands21 ± 31 of 4 1.60None
Virgin spermatheca2 ± 00 of 4 0.20Down
Mated spermatheca4 ± 10 of 4 0.33Down
Adult carcass17 ± 20 of 4 1.20None
Larval CNS7 ± 10 of 4 0.56Down
Larval Salivary gland12 ± 30 of 4 0.94None
Larval midgut8 ± 30 of 4 0.65None
Larval tubule17 ± 32 of 4 1.30None
Larval hindgut17 ± 01 of 4 1.28None
Larval fat body28 ± 10 of 4 2.10Up
Larval trachea5 ± 20 of 4 0.37Down
Larval carcass8 ± 20 of 4 0.61None
S2 cells (growing)40 ± 34 of 4 2.96Up
Whole fly13 ± 11 of 4

Looking for CG31653-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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