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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31665-RA through 18771 annotations produced 1 hits



fibropellin (CG31665):

Annotation Number : CG31665
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051665
Gbrowse : chr2L:1842998-1858551 (+) // 100.0 //
Probeset : 1633775_at
Accessions : protein= NP_722737; /// NP_995611;, nucleotide= NM_164443; /// NM_205889;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0051665.
BDGP gene expression has embryonic in situ data for CG31665: 15 pix of staining in 4 body parts.
Homophila reports that CG31665 is a close match (7e-11) to human gene EFEMP2;FBLN4;UPH1 (NP_058634), a gene associated with Cutis laxa, autosomal recessive, type I, 219100 (3).
BioGrid reports that CG31665 interacts with CG9610 .
TRiP has 1 RNAi stocks for FBgn0051665 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051665 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1242 ± 424 of 436.50Up
Head288 ± 284 of 4 8.50Up
Eye50 ± 84 of 4 1.48None
Thoracicoabdominal ganglion1522 ± 394 of 444.70Up
Salivary gland6 ± 20 of 4 0.18Down
Crop4 ± 10 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule5 ± 01 of 4 0.20Down
Hindgut5 ± 00 of 4 0.20Down
Heart5 ± 00 of 4 0.17Down
Fat body10 ± 14 of 4 0.30Down
Ovary0 ± 00 of 4 0.00Down
Testis2 ± 00 of 4 0.10Down
Male accessory glands8 ± 20 of 4 0.30Down
Virgin spermatheca6 ± 22 of 4 0.19Down
Mated spermatheca5 ± 12 of 4 0.16Down
Adult carcass8 ± 20 of 4 0.30Down
Larval CNS391 ± 454 of 411.50Up
Larval Salivary gland2 ± 10 of 4 0.09Down
Larval midgut2 ± 00 of 4 0.07Down
Larval tubule5 ± 10 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body1 ± 00 of 4 0.00Down
Larval trachea4 ± 10 of 4 0.14Down
Larval carcass2 ± 00 of 4 0.06Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly34 ± 64 of 4

Looking for CG31665-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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