FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG31666-RC through 18771 annotations produced 1 hits

Chronologically inappropriate morphogenesis (chinmo):

Annotation Number : CG31666
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0086758
Gbrowse : chr2L:1667846-1698617 (+) // 99.76 //
Probeset : 1628005_at
Accessions : protein= NP_608610; /// NP_722717; /// NP_722718; /// NP_722719;, nucleotide= NM_134766; /// NM_164428; /// NM_164429; /// NM_164430;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003700 // sequence-specific DNA binding transcription factor activity // inferred from sequence or structural similarit
FlyMine data for FBgn0086758.
BioGrid reports that CG31666 interacts with CG32016 CG3382 CG3771 .
TRiP has 3 RNAi stocks for FBgn0086758 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	240 ± 7	4 of 4	17.10	Up
Head	33 ± 3	4 of 4	2.40	Up
Eye	52 ± 4	4 of 4	3.76	Up
Thoracicoabdominal ganglion	160 ± 3	4 of 4	11.40	Up
Salivary gland	11 ± 2	0 of 4	0.80	None
Crop	3 ± 1	0 of 4	0.30	Down
Midgut	15 ± 2	1 of 4	1.10	None
Tubule	33 ± 1	4 of 4	2.40	Up
Hindgut	9 ± 1	2 of 4	0.70	None
Heart	41 ± 5	4 of 4	2.97	Up
Fat body	15 ± 7	4 of 4	1.11	None
Ovary	3 ± 0	1 of 4	0.30	Down
Testis	83 ± 1	4 of 4	6.00	Up
Male accessory glands	4 ± 1	0 of 4	0.30	Down
Virgin spermatheca	23 ± 4	4 of 4	1.67	None
Mated spermatheca	22 ± 7	3 of 4	1.63	None
Adult carcass	6 ± 1	0 of 4	0.50	Down
Larval CNS	534 ± 24	4 of 4	38.09	Up
Larval Salivary gland	122 ± 12	4 of 4	8.71	Up
Larval midgut	81 ± 7	4 of 4	5.77	Up
Larval tubule	84 ± 3	4 of 4	6.00	Up
Larval hindgut	139 ± 15	4 of 4	9.93	Up
Larval fat body	19 ± 6	3 of 4	1.40	None
Larval trachea	364 ± 48	4 of 4	25.95	Up
Larval carcass	173 ± 14	4 of 4	12.39	Up
S2 cells (growing)	213 ± 4	4 of 4	15.19	Up
Whole fly	14 ± 2	4 of 4

Looking for CG31666-RC. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720