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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31668-RA through 18771 annotations produced 1 hits



(CG31668):

Annotation Number : CG31668
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051668
Gbrowse : chr2L:2203903-2206429 (-) // 100.0 //
Probeset : 1639843_at
Accessions : protein= NP_001097055;, nucleotide= NM_001103585;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from sequence or structural similarity /// 0005215 // transporter activity /
FlyMine data for FBgn0051668.
Homophila reports that CG31668 is a close match (7e-37) to human gene SLC5A5;NIS (NP_000444), a gene associated with Hypothyroidism, congenital, 274400 (3).
VDRC has 2 RNAi stocks for FBgn0051668 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 12 of 4 0.70None
Head6 11 of 4 0.80None
Eye9 03 of 4 1.29None
Thoracicoabdominal ganglion4 12 of 4 0.60None
Salivary gland11 20 of 4 1.59None
Crop6 01 of 4 0.90None
Midgut11 23 of 4 1.60None
Tubule8 01 of 4 1.10Up
Hindgut8 04 of 4 1.10None
Heart4 12 of 4 0.57None
Fat body4 41 of 4 0.67None
Ovary2 01 of 4 0.40None
Testis2 00 of 4 0.40None
Male accessory glands13 22 of 4 1.90None
Virgin spermatheca5 10 of 4 0.79None
Mated spermatheca11 12 of 4 1.55None
Adult carcass10 20 of 4 1.40None
Larval CNS3 13 of 4 0.48None
Larval Salivary gland7 10 of 4 1.06None
Larval midgut4 10 of 4 0.59None
Larval tubule7 11 of 4 1.10None
Larval hindgut5 13 of 4 0.73None
Larval fat body9 10 of 4 1.30None
Larval trachea3 10 of 4 0.42None
Larval carcass12 14 of 4 1.74None
S2 cells (growing)3 00 of 4 0.53None
Whole fly7 20 of 4

Looking for CG31668-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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