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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3167-RA through 18771 annotations produced 1 hits



MAN1 (MAN1):

Annotation Number : CG3167
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034962
Gbrowse : chr2R:19921731-19924231 (+) // 100.0 //
Probeset : 1631696_s_at
Accessions : protein= NP_611873; /// NP_726404;, nucleotide= NM_138029; /// NM_166651;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from electronic an
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electro
FlyMine data for FBgn0034962.
Homophila reports that CG3167 is a close match (1e-21) to human gene LEMD3;MAN1 (NP_055134), a gene associated with Buschke-Ollendorff syndrome, 166700 (3);Melorheostosis with osteopoikilosis, 155950 (3);Osteopoikilosis, 166700 (3).
VDRC has 2 RNAi stocks for FBgn0034962 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain175 ± 34 of 4 0.60Down
Head117 ± 44 of 4 0.40Down
Eye98 ± 14 of 4 0.35Down
Thoracicoabdominal ganglion156 ± 24 of 4 0.60Down
Salivary gland106 ± 24 of 4 0.38Down
Crop162 ± 84 of 4 0.60Down
Midgut87 ± 34 of 4 0.30Down
Tubule187 ± 94 of 4 0.70Down
Hindgut86 ± 34 of 4 0.30Down
Heart105 ± 14 of 4 0.38Down
Fat body129 ± 104 of 4 0.47Down
Ovary658 ± 84 of 4 2.40Up
Testis448 ± 44 of 4 1.60Up
Male accessory glands137 ± 104 of 4 0.50Down
Virgin spermatheca129 ± 14 of 4 0.46Down
Mated spermatheca145 ± 44 of 4 0.52Down
Adult carcass142 ± 84 of 4 0.50Down
Larval CNS183 ± 74 of 4 0.66Down
Larval Salivary gland168 ± 34 of 4 0.61Down
Larval midgut62 ± 14 of 4 0.23Down
Larval tubule78 ± 24 of 4 0.30Down
Larval hindgut87 ± 14 of 4 0.31Down
Larval fat body170 ± 234 of 4 0.60Down
Larval trachea168 ± 114 of 4 0.60Down
Larval carcass113 ± 44 of 4 0.41Down
S2 cells (growing)167 ± 44 of 4 0.60Down
Whole fly278 ± 74 of 4

Looking for CG3167-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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