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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31670-RA through 18771 annotations produced 1 hits



earmuff (erm):

Annotation Number : CG31670
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031375
Gbrowse : chr2L:1950234-1954519 (-) // 100.0 //
Probeset : 1624470_at
Accessions : protein= NP_608631;, nucleotide= NM_134787;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from
FlyMine data for FBgn0031375.
Homophila reports that CG31670 is a close match (6e-11) to human gene GLI2;HPE9 (NP_005261), a gene associated with Holoprosencephaly-9, 610829 (3);Pituitary anomalies with holoprosencephaly-like features (3).
TRiP has 1 RNAi stocks for FBgn0031375 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031375 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain247 114 of 435.10Up
Head50 14 of 4 7.10Up
Eye101 94 of 414.40Up
Thoracicoabdominal ganglion1 00 of 4 0.20Down
Salivary gland4 20 of 4 0.59None
Crop2 00 of 4 0.40None
Midgut1 00 of 4 0.20Down
Tubule1 00 of 4 0.30Down
Hindgut1 00 of 4 0.10Down
Heart2 00 of 4 0.33None
Fat body1 10 of 4 0.24None
Ovary1 00 of 4 0.20Down
Testis8 14 of 4 1.30None
Male accessory glands5 20 of 4 0.80None
Virgin spermatheca1 00 of 4 0.19Down
Mated spermatheca3 20 of 4 0.45None
Adult carcass3 00 of 4 0.40None
Larval CNS381 354 of 454.12Up
Larval Salivary gland1 00 of 4 0.24Down
Larval midgut2 10 of 4 0.36None
Larval tubule1 00 of 4 0.10Down
Larval hindgut0 00 of 4 0.09Down
Larval fat body7 21 of 4 1.00None
Larval trachea3 30 of 4 0.48None
Larval carcass1 00 of 4 0.20Down
S2 cells (growing)1 00 of 4 0.21Down
Whole fly7 11 of 4

Looking for CG31670-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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