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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31671-RA through 18771 annotations produced 1 hits



tho2 (tho2):

Annotation Number : CG31671
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031390
Gbrowse : chr2L:2137349-2145175 (-) // 100.0 //
Probeset : 1637329_a_at
Accessions : protein= NP_608646; /// NP_722763;, nucleotide= NM_134802; /// NM_164454;
FlyMine data for FBgn0031390.
TRiP has 1 RNAi stocks for FBgn0031390 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031390 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain140 ± 54 of 4 1.60Up
Head74 ± 24 of 4 0.80None
Eye77 ± 54 of 4 0.87None
Thoracicoabdominal ganglion111 ± 54 of 4 1.30Up
Salivary gland82 ± 42 of 4 0.92None
Crop73 ± 34 of 4 0.80None
Midgut69 ± 54 of 4 0.80None
Tubule94 ± 04 of 4 1.10Up
Hindgut81 ± 44 of 4 0.90None
Heart48 ± 24 of 4 0.55Down
Fat body47 ± 104 of 4 0.53Down
Ovary141 ± 104 of 4 1.60Up
Testis41 ± 14 of 4 0.50Down
Male accessory glands87 ± 84 of 4 1.00None
Virgin spermatheca80 ± 34 of 4 0.90None
Mated spermatheca79 ± 44 of 4 0.89None
Adult carcass60 ± 34 of 4 0.70Down
Larval CNS244 ± 224 of 4 2.74Up
Larval Salivary gland139 ± 54 of 4 1.56Up
Larval midgut49 ± 50 of 4 0.55Down
Larval tubule64 ± 34 of 4 0.70Down
Larval hindgut115 ± 44 of 4 1.29Up
Larval fat body55 ± 14 of 4 0.60Down
Larval trachea113 ± 124 of 4 1.27Up
Larval carcass97 ± 44 of 4 1.09None
S2 cells (growing)172 ± 64 of 4 1.94Up
Whole fly89 ± 64 of 4

Looking for CG31671-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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