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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31674-RA through 18771 annotations produced 1 hits



(CG31674):

Annotation Number : CG31674
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051674
Gbrowse : chr2L:20831477-20832783 (+) // 100.0 //
Probeset : 1638368_at
Accessions : protein= NP_610063;, nucleotide= NM_136219;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic
FlyMine data for FBgn0051674.
Homophila reports that CG31674 is a close match (4e-26) to human gene PHGDH (NP_006614), a gene associated with Phosphoglycerate dehydrogenase deficiency, 601815 (3).
BioGrid reports that CG31674 interacts with CG7196 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 24 of 4 0.30Down
Head23 ± 24 of 4 0.30Down
Eye21 ± 14 of 4 0.28Down
Thoracicoabdominal ganglion26 ± 34 of 4 0.30Down
Salivary gland49 ± 53 of 4 0.63None
Crop22 ± 23 of 4 0.30Down
Midgut530 ± 94 of 4 6.80Up
Tubule1066 ± 454 of 413.70Up
Hindgut119 ± 84 of 4 1.50Up
Heart77 ± 54 of 4 1.00None
Fat body87 ± 204 of 4 1.13None
Ovary43 ± 14 of 4 0.60None
Testis8 ± 00 of 4 0.10Down
Male accessory glands12 ± 30 of 4 0.20Down
Virgin spermatheca157 ± 34 of 4 2.03Up
Mated spermatheca121 ± 134 of 4 1.56Up
Adult carcass44 ± 24 of 4 0.60None
Larval CNS10 ± 33 of 4 0.13Down
Larval Salivary gland16 ± 32 of 4 0.22Down
Larval midgut85 ± 64 of 4 1.11None
Larval tubule150 ± 34 of 4 1.90Up
Larval hindgut141 ± 144 of 4 1.82Up
Larval fat body56 ± 134 of 4 0.70None
Larval trachea15 ± 54 of 4 0.20Down
Larval carcass22 ± 22 of 4 0.29Down
S2 cells (growing)40 ± 14 of 4 0.52Down
Whole fly77 ± 114 of 4

Looking for CG31674-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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