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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31681-RA through 18771 annotations produced 1 hits



(CG31681):

Annotation Number : CG31681
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051681
Gbrowse : chr2L:2286049-2286844 (-) // 100.0 //
Probeset : 1627162_at
Accessions : protein= NP_722789;, nucleotide= NM_164473;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0051681.
Homophila reports that CG31681 is a close match (9e-15) to human gene F7 (NP_000122), a gene associated with Factor VII deficiency (3);{Myocardial infarction, decreased susceptibility to} (3).
VDRC has 3 RNAi stocks for FBgn0051681 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye4 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.00Down
Salivary gland13 ± 10 of 4 0.05Down
Crop5 ± 00 of 4 0.00Down
Midgut5 ± 00 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut5 ± 01 of 4 0.00Down
Heart1 ± 00 of 4 0.01Down
Fat body37 ± 492 of 4 0.12Down
Ovary3 ± 11 of 4 0.00Down
Testis4 ± 02 of 4 0.00Down
Male accessory glands22 ± 24 of 4 0.10Down
Virgin spermatheca5875 ± 2354 of 419.43Up
Mated spermatheca6374 ± 2674 of 421.08Up
Adult carcass52 ± 302 of 4 0.20Down
Larval CNS2 ± 11 of 4 0.01Down
Larval Salivary gland2 ± 10 of 4 0.01Down
Larval midgut5 ± 10 of 4 0.02Down
Larval tubule3 ± 00 of 4 0.00Down
Larval hindgut3 ± 10 of 4 0.01Down
Larval fat body4 ± 20 of 4 0.00Down
Larval trachea5 ± 11 of 4 0.02Down
Larval carcass2 ± 10 of 4 0.01Down
S2 cells (growing)2 ± 01 of 4 0.01Down
Whole fly302 ± 364 of 4

Looking for CG31681-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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