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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31682-RA through 18771 annotations produced 1 hits



(CG31682):

Annotation Number : CG31682
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051682
Gbrowse : chr2L:2239407-2240593 (-) // 100.0 //
Probeset : 1641601_at
Accessions : protein= NP_722780;, nucleotide= NM_164467;
Pathway : 0005739 // mitochondrion // inferred from sequence or structural similarity
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0004520 // endodeoxyribonuclease activity //
FlyMine data for FBgn0051682.
BDGP gene expression has embryonic in situ data for CG31682: 4 pix of staining in 1 body parts.
BioGrid reports that CG31682 interacts with CG7856 CG9091 .
VDRC has 1 RNAi stocks for FBgn0051682 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head3 10 of 4 0.10Down
Eye2 00 of 4 0.03Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland29 51 of 4 0.49Down
Crop8 30 of 4 0.10Down
Midgut4 10 of 4 0.10Down
Tubule2 00 of 4 0.00Down
Hindgut4 10 of 4 0.10Down
Heart4 10 of 4 0.07Down
Fat body4 40 of 4 0.08Down
Ovary0 00 of 4 0.00Down
Testis823 274 of 413.40Up
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca2 20 of 4 0.04Down
Mated spermatheca2 10 of 4 0.03Down
Adult carcass3 10 of 4 0.10Down
Larval CNS1 00 of 4 0.02Down
Larval Salivary gland5 20 of 4 0.09Down
Larval midgut7 10 of 4 0.12Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut11 01 of 4 0.19Down
Larval fat body95 443 of 4 1.60None
Larval trachea3 50 of 4 0.06Down
Larval carcass3 00 of 4 0.06Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly61 54 of 4

Looking for CG31682-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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