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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31689-RC through 18771 annotations produced 1 hits



(CG31689):

Annotation Number : CG31689
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031449
Gbrowse : chr2L:2730105-2739833 (+) // 100.0 //
Probeset : 1639286_s_at
Accessions : protein= NP_608703; /// NP_722827; /// NP_722828; /// NP_722829;, nucleotide= NM_134859; /// NM_164493; /// NM_164494; /// NM_164495;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0031449.
Homophila reports that CG31689 is a close match (7e-11) to human gene ABCB3;PSF2;RING11;TAP2 (NP_061313), a gene associated with Bare lymphocyte syndrome, type I, due to TAP2 deficiency, 604571 (3);Wegener-like granulomatosis (3).
VDRC has 3 RNAi stocks for FBgn0031449 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 24 of 4 0.30Down
Head568 744 of 4 2.20Up
Eye422 464 of 4 1.65Up
Thoracicoabdominal ganglion112 34 of 4 0.40Down
Salivary gland59 94 of 4 0.23Down
Crop275 144 of 4 1.10None
Midgut197 74 of 4 0.80None
Tubule68 74 of 4 0.30Down
Hindgut333 164 of 4 1.30None
Heart1109 114 of 4 4.35Up
Fat body710 1364 of 4 2.78Up
Ovary300 114 of 4 1.20None
Testis71 64 of 4 0.30Down
Male accessory glands191 224 of 4 0.80None
Virgin spermatheca667 384 of 4 2.62Up
Mated spermatheca515 714 of 4 2.02Up
Adult carcass851 484 of 4 3.30Up
Larval CNS14 34 of 4 0.06Down
Larval Salivary gland12 21 of 4 0.05Down
Larval midgut50 24 of 4 0.20Down
Larval tubule33 34 of 4 0.10Down
Larval hindgut84 54 of 4 0.33Down
Larval fat body54 24 of 4 0.20Down
Larval trachea68 44 of 4 0.27Down
Larval carcass165 174 of 4 0.65None
S2 cells (growing)331 34 of 4 1.30None
Whole fly255 344 of 4

Looking for CG31689-RC. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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