FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG3169-RA through 18771 annotations produced 1 hits

Spt3 (Spt3):

Annotation Number : CG3169
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037981
Gbrowse : chr3R:7842879-7844102 (+) // 100.0 //
Probeset : 1628456_at
Accessions : protein= NP_650146;, nucleotide= NM_141889;
Pathway : 0000123 // histone acetyltransferase complex // inferred from sequence or structural similarity /// 0000124 // SAGA comp
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription
FlyMine data for FBgn0037981.
BioGrid reports that CG3169 interacts with CG9638 CG4107 CG7098 CG7704 CG6474 CG2859 CG9638 CG33520 .
TRiP has 1 RNAi stocks for FBgn0037981 available for purchase.
VDRC has 1 RNAi stocks for FBgn0037981 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	91 ± 2	4 of 4	1.60	Up
Head	51 ± 3	4 of 4	0.90	None
Eye	60 ± 2	4 of 4	1.09	None
Thoracicoabdominal ganglion	91 ± 4	4 of 4	1.70	Up
Salivary gland	79 ± 4	4 of 4	1.43	Up
Crop	61 ± 6	4 of 4	1.10	None
Midgut	47 ± 2	4 of 4	0.90	None
Tubule	52 ± 2	4 of 4	0.90	None
Hindgut	62 ± 3	4 of 4	1.10	None
Heart	36 ± 1	4 of 4	0.66	Down
Fat body	36 ± 9	4 of 4	0.65	Down
Ovary	95 ± 2	4 of 4	1.70	Up
Testis	32 ± 1	4 of 4	0.60	Down
Male accessory glands	74 ± 3	4 of 4	1.30	Up
Virgin spermatheca	49 ± 2	4 of 4	0.89	None
Mated spermatheca	49 ± 3	4 of 4	0.89	None
Adult carcass	32 ± 2	4 of 4	0.60	Down
Larval CNS	81 ± 11	4 of 4	1.46	Up
Larval Salivary gland	54 ± 3	4 of 4	0.98	None
Larval midgut	41 ± 2	4 of 4	0.74	Down
Larval tubule	90 ± 2	4 of 4	1.60	Up
Larval hindgut	36 ± 3	4 of 4	0.65	Down
Larval fat body	59 ± 4	4 of 4	1.10	None
Larval trachea	60 ± 2	4 of 4	1.08	None
Larval carcass	43 ± 4	4 of 4	0.78	None
S2 cells (growing)	66 ± 2	4 of 4	1.19	Up
Whole fly	55 ± 3	4 of 4

Looking for CG3169-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720