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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31694-RA through 18771 annotations produced 1 hits



(CG31694):

Annotation Number : CG31694
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051694
Gbrowse : chr2L:2868626-2874518 (-) // 100.0 //
Probeset : 1637307_at
Accessions : protein= NP_722858;, nucleotide= NM_164511;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0051694.
TRiP has 1 RNAi stocks for FBgn0051694 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051694 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain337 ± 44 of 4 0.80Down
Head299 ± 44 of 4 0.70Down
Eye309 ± 64 of 4 0.75Down
Thoracicoabdominal ganglion431 ± 104 of 4 1.00None
Salivary gland1109 ± 134 of 4 2.68Up
Crop340 ± 84 of 4 0.80Down
Midgut321 ± 44 of 4 0.80Down
Tubule415 ± 74 of 4 1.00None
Hindgut219 ± 34 of 4 0.50Down
Heart352 ± 244 of 4 0.85None
Fat body563 ± 194 of 4 1.36Up
Ovary614 ± 84 of 4 1.50Up
Testis664 ± 114 of 4 1.60Up
Male accessory glands567 ± 254 of 4 1.40Up
Virgin spermatheca454 ± 234 of 4 1.10None
Mated spermatheca479 ± 84 of 4 1.16Up
Adult carcass395 ± 174 of 4 1.00None
Larval CNS361 ± 44 of 4 0.87Down
Larval Salivary gland847 ± 784 of 4 2.05Up
Larval midgut646 ± 314 of 4 1.56Up
Larval tubule632 ± 94 of 4 1.50Up
Larval hindgut451 ± 204 of 4 1.09None
Larval fat body698 ± 264 of 4 1.70Up
Larval trachea304 ± 314 of 4 0.74Down
Larval carcass571 ± 244 of 4 1.38Up
S2 cells (growing)561 ± 84 of 4 1.36Up
Whole fly413 ± 84 of 4

Looking for CG31694-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime