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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31708-RB through 18771 annotations produced 1 hits



(CG31708):

Annotation Number : CG31708
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051708
Gbrowse : chr2L:9051623-9071162 (-) // 100.0 //
Probeset : 1632477_s_at
Accessions : protein= NP_723441; /// NP_723442;, nucleotide= NM_164845; /// NM_164846;
FlyMine data for FBgn0051708.
BDGP gene expression has embryonic in situ data for CG31708: 4 pix of staining in 1 body parts.
Homophila reports that CG31708 is a close match (3e-12) to human gene MUSK (NP_005583), a gene associated with Myasthenic syndrome, congenital, associated with acetylcholine receptor deficiency, 608931 (3).
BioGrid reports that CG31708 interacts with CG6767 .
TRiP has 1 RNAi stocks for FBgn0051708 available for purchase.
VDRC has 3 RNAi stocks for FBgn0051708 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 44 of 4 9.90Up
Head14 14 of 4 3.80Up
Eye4 10 of 4 1.21None
Thoracicoabdominal ganglion23 24 of 4 6.20Up
Salivary gland3 20 of 4 1.05None
Crop5 01 of 4 1.40None
Midgut0 00 of 4 0.20Down
Tubule2 00 of 4 0.80None
Hindgut0 00 of 4 0.20Down
Heart1 00 of 4 0.30Down
Fat body11 33 of 4 2.95Up
Ovary0 00 of 4 0.00Down
Testis11 14 of 4 3.10Up
Male accessory glands3 10 of 4 0.80None
Virgin spermatheca6 13 of 4 1.62None
Mated spermatheca5 22 of 4 1.45None
Adult carcass4 20 of 4 1.10None
Larval CNS20 104 of 4 5.38None
Larval Salivary gland0 00 of 4 0.14Down
Larval midgut0 00 of 4 0.08Down
Larval tubule3 00 of 4 0.90None
Larval hindgut0 00 of 4 0.21Down
Larval fat body2 11 of 4 0.80None
Larval trachea2 10 of 4 0.53None
Larval carcass1 00 of 4 0.31Down
S2 cells (growing)0 00 of 4 0.04Down
Whole fly3 02 of 4

Looking for CG31708-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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