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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3171-RA through 18771 annotations produced 1 hits



chrX:5567868-5574008 (-) // 100.0 // (trapped in endoderm-1):

Annotation Number : CG3171
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625691_at
Accessions : protein= , nucleotide= NP_524792;
Pathway : 0001582 // detection of chemical stimulus involved in sensory perception of sweet taste // inferred from mutant phenotyp
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for full length.
Homophila reports that CG3171 is a close match (8e-11) to human gene DRD1B;DRD1L2;DRD5 (NP_000789), a gene associated with Dystonia, primary cervical (3);{Attention deficit-hyperactivity disorder, susceptibility to}, 143465 (3);{Blepharospasm, primary benign}, 606798 (3).
BioGrid reports that CG3171 interacts with CG1851 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 14 of 4 0.20Down
Head46 24 of 4 0.40Down
Eye33 24 of 4 0.32Down
Thoracicoabdominal ganglion48 44 of 4 0.40Down
Salivary gland411 94 of 4 3.85Up
Crop169 94 of 4 1.60Up
Midgut62 44 of 4 0.60Down
Tubule13 23 of 4 0.10Down
Hindgut160 24 of 4 1.50Up
Heart53 134 of 4 0.51Down
Fat body14 44 of 4 0.14Down
Ovary276 54 of 4 2.60Up
Testis38 04 of 4 0.40Down
Male accessory glands76 44 of 4 0.70Down
Virgin spermatheca28 34 of 4 0.27Down
Mated spermatheca39 44 of 4 0.37Down
Adult carcass51 24 of 4 0.50Down
Larval CNS86 74 of 4 0.81Down
Larval Salivary gland76 44 of 4 0.72Down
Larval midgut49 44 of 4 0.46Down
Larval tubule25 14 of 4 0.20Down
Larval hindgut139 54 of 4 1.31Up
Larval fat body79 124 of 4 0.70None
Larval trachea146 134 of 4 1.37Up
Larval carcass88 54 of 4 0.83None
S2 cells (growing)341 74 of 4 3.20Up
Whole fly106 54 of 4

Looking for CG3171-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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