FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG31718-RA through 18771 annotations produced 1 hits

CG31718 (Ir31a):

Annotation Number : CG31718
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051718
Gbrowse : chr2L:10406074-10408011 (+) // 100.0 //
Probeset : 1640705_at
Accessions : protein= NP_723585;, nucleotide= NM_164926;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004970 // ionotropic glutamate receptor activit
FlyMine data for FBgn0051718.
VDRC has 3 RNAi stocks for FBgn0051718 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 1	0 of 4	2.50	Up
Head	19 ± 3	4 of 4	10.10	Up
Eye	1 ± 0	0 of 4	0.88	None
Thoracicoabdominal ganglion	4 ± 1	0 of 4	2.10	None
Salivary gland	12 ± 3	0 of 4	6.34	None
Crop	1 ± 0	0 of 4	1.00	None
Midgut	1 ± 0	0 of 4	0.50	None
Tubule	3 ± 0	0 of 4	1.50	None
Hindgut	2 ± 1	0 of 4	1.30	None
Heart	0 ± 0	0 of 4	0.22	None
Fat body	7 ± 2	0 of 4	3.74	Up
Ovary	4 ± 0	0 of 4	2.20	None
Testis	3 ± 0	0 of 4	1.90	None
Male accessory glands	7 ± 2	0 of 4	4.10	None
Virgin spermatheca	2 ± 1	0 of 4	1.39	None
Mated spermatheca	4 ± 0	0 of 4	2.06	None
Adult carcass	5 ± 2	0 of 4	2.80	None
Larval CNS	3 ± 2	0 of 4	2.04	None
Larval Salivary gland	3 ± 1	0 of 4	1.97	None
Larval midgut	1 ± 0	0 of 4	0.57	None
Larval tubule	2 ± 1	0 of 4	1.50	None
Larval hindgut	1 ± 0	0 of 4	0.94	None
Larval fat body	3 ± 1	0 of 4	1.70	None
Larval trachea	2 ± 1	0 of 4	1.13	None
Larval carcass	1 ± 0	0 of 4	0.56	None
S2 cells (growing)	1 ± 1	0 of 4	1.01	None
Whole fly	1 ± 0	0 of 4

Looking for CG31718-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720