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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31720-RA through 18771 annotations produced 1 hits



/// (CG31720 /// DsecGM11932):

Annotation Number : CG31720
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051720
Gbrowse : chr2L:10234786-10237845 (-) // 100.0 //
Probeset : 1632145_a_at
Accessions : protein= NP_723537; /// NP_723538;, nucleotide= NM_164896; /// NM_164897;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004872 // receptor activity // inferred from electronic annotation /// 0004888 // transmembrane receptor activity // in
FlyMine data for FBgn0051720.
TRiP has 2 RNAi stocks for FBgn0051720 available for purchase.
VDRC has 2 RNAi stocks for FBgn0051720 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 13 of 4 0.80None
Head6 ± 10 of 4 0.70None
Eye1 ± 00 of 4 0.16Down
Thoracicoabdominal ganglion12 ± 24 of 4 1.30None
Salivary gland11 ± 40 of 4 1.25None
Crop19 ± 24 of 4 2.10Up
Midgut175 ± 94 of 419.00Up
Tubule7 ± 11 of 4 0.80Down
Hindgut63 ± 34 of 4 6.90Up
Heart3 ± 00 of 4 0.37Down
Fat body9 ± 20 of 4 1.04None
Ovary2 ± 01 of 4 0.30Down
Testis1 ± 00 of 4 0.10Down
Male accessory glands7 ± 20 of 4 0.80None
Virgin spermatheca6 ± 03 of 4 0.74None
Mated spermatheca7 ± 01 of 4 0.82None
Adult carcass4 ± 20 of 4 0.50None
Larval CNS3 ± 11 of 4 0.42Down
Larval Salivary gland2 ± 00 of 4 0.23Down
Larval midgut41 ± 14 of 4 4.50Up
Larval tubule7 ± 12 of 4 0.80None
Larval hindgut16 ± 14 of 4 1.74Up
Larval fat body10 ± 32 of 4 1.10None
Larval trachea3 ± 10 of 4 0.36Down
Larval carcass4 ± 00 of 4 0.44Down
S2 cells (growing)3 ± 00 of 4 0.36Down
Whole fly9 ± 12 of 4

Looking for CG31720-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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