FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG31721-RA through 18771 annotations produced 1 hits

Trim9 (Trim9):

Annotation Number : CG31721
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051721
Gbrowse : chr2L:10544880-10627374 (+) // 100.0 //
Probeset : 1625935_at
Accessions : protein= NP_723600;, nucleotide= NM_164935;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0051721.
BDGP gene expression has embryonic in situ data for CG31721: 24 pix of staining in 19 body parts.
Homophila reports that CG31721 is a close match (6e-35) to human gene BBBG1;FXY;MID1;OGS1;OSX (NP_150632), a gene associated with Opitz G syndrome, type I, 300000 (3).
BioGrid reports that CG31721 interacts with CG6707 CG4863 CG5461 CG6050 CG7386 CG7954 CG9653 .
VDRC has 3 RNAi stocks for FBgn0051721 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	93 ± 5	4 of 4	11.70	Up
Head	14 ± 1	2 of 4	1.80	Up
Eye	23 ± 2	3 of 4	2.96	Up
Thoracicoabdominal ganglion	69 ± 9	4 of 4	8.70	Up
Salivary gland	4 ± 2	0 of 4	0.56	None
Crop	7 ± 1	0 of 4	0.90	None
Midgut	70 ± 3	4 of 4	8.90	Up
Tubule	7 ± 0	0 of 4	0.90	None
Hindgut	18 ± 1	3 of 4	2.30	Up
Heart	9 ± 0	3 of 4	1.25	None
Fat body	7 ± 1	0 of 4	0.87	None
Ovary	1 ± 0	0 of 4	0.20	Down
Testis	6 ± 0	2 of 4	0.90	None
Male accessory glands	2 ± 1	0 of 4	0.30	Down
Virgin spermatheca	23 ± 1	4 of 4	2.99	Up
Mated spermatheca	32 ± 2	4 of 4	4.01	Up
Adult carcass	5 ± 1	0 of 4	0.70	None
Larval CNS	59 ± 4	4 of 4	7.39	Up
Larval Salivary gland	3 ± 1	0 of 4	0.41	None
Larval midgut	23 ± 2	2 of 4	2.88	Up
Larval tubule	3 ± 1	0 of 4	0.50	None
Larval hindgut	18 ± 1	4 of 4	2.29	Up
Larval fat body	2 ± 1	0 of 4	0.30	Down
Larval trachea	15 ± 2	2 of 4	1.94	Up
Larval carcass	2 ± 1	0 of 4	0.37	None
S2 cells (growing)	1 ± 0	0 of 4	0.17	Down
Whole fly	8 ± 1	1 of 4

Looking for CG31721-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720