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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31731-RA through 18771 annotations produced 1 hits



(CG31731):

Annotation Number : CG31731
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028539
Gbrowse : chr2L:13784169-13790563 (+) // 100.0 //
Probeset : 1641130_at
Accessions : protein= NP_001036360; /// NP_001162974; /// NP_723838;, nucleotide= NM_001042895; /// NM_001169503; /// NM_165058;
Pathway : 0043190 // ATP-binding cassette (ABC) transporter complex // inferred from sequence or structural similarity
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005215 // transporter activity // inferred fr
FlyMine data for FBgn0028539.
BDGP gene expression has embryonic in situ data for BG:DS00797.5: 4 pix of staining in 1 body parts.
Homophila reports that CG31731 is a close match (7e-12) to human gene ABCG8 (NP_071882), a gene associated with Sitosterolemia, 210250 (3).
BioGrid reports that CG31731 interacts with CG6733 CG5005 CG5374 CG6779 CG8365 CG9769 .
VDRC has 2 RNAi stocks for FBgn0028539 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain171 44 of 4 1.40Up
Head109 44 of 4 0.90None
Eye164 84 of 4 1.38Up
Thoracicoabdominal ganglion147 34 of 4 1.20Up
Salivary gland261 104 of 4 2.20Up
Crop151 44 of 4 1.30Up
Midgut259 164 of 4 2.20Up
Tubule342 74 of 4 2.90Up
Hindgut159 44 of 4 1.30Up
Heart189 84 of 4 1.59Up
Fat body163 94 of 4 1.38Up
Ovary216 34 of 4 1.80Up
Testis213 04 of 4 1.80Up
Male accessory glands497 224 of 4 4.20Up
Virgin spermatheca323 224 of 4 2.71Up
Mated spermatheca362 234 of 4 3.04Up
Adult carcass126 44 of 4 1.10None
Larval CNS320 194 of 4 2.70Up
Larval Salivary gland285 74 of 4 2.40Up
Larval midgut208 194 of 4 1.75Up
Larval tubule574 164 of 4 4.80Up
Larval hindgut251 114 of 4 2.11Up
Larval fat body580 734 of 4 4.90Up
Larval trachea265 254 of 4 2.23Up
Larval carcass218 214 of 4 1.84Up
S2 cells (growing)266 44 of 4 2.23Up
Whole fly119 44 of 4

Looking for CG31731-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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