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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31741-RA through 18771 annotations produced 1 hits



(CG31741):

Annotation Number : CG31741
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051741
Gbrowse : chr2L:18084267-18085626 (+) // 100.0 //
Probeset : 1639755_at
Accessions : protein= NP_724088;, nucleotide= NM_165238;
Pathway : 0005887 // integral to plasma membrane // non-traceable author statement /// 0016020 // membrane // inferred from electr
Interpro : 0005044 // scavenger receptor activity // inferred from sequence or structural similarity /// 0005044 // scavenger recep
FlyMine data for FBgn0051741.
Homophila reports that CG31741 is a close match (9e-31) to human gene CD36;CHDS7 (NP_001001548), a gene associated with Platelet glycoprotein IV deficiency, 608404 (3);[Macrothrombocytopenia] (1);{Coronary heart disease, susceptibility to, 7}, 610938 (3);{Malaria, cerebral, reduced risk of}, 611162 (3);{Malaria, cerebral, susceptibility to}, 611162 (3).
VDRC has 1 RNAi stocks for FBgn0051741 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 1.00None
Head1 00 of 4 0.60None
Eye1 00 of 4 0.74None
Thoracicoabdominal ganglion1 00 of 4 0.80None
Salivary gland2 00 of 4 1.36None
Crop2 10 of 4 1.30None
Midgut2 00 of 4 1.00None
Tubule2 00 of 4 1.20None
Hindgut2 10 of 4 1.10None
Heart1 00 of 4 0.59None
Fat body4 20 of 4 2.10None
Ovary1 00 of 4 0.70None
Testis1 00 of 4 0.80None
Male accessory glands4 20 of 4 2.00None
Virgin spermatheca3 10 of 4 1.94None
Mated spermatheca2 00 of 4 1.18None
Adult carcass4 20 of 4 2.40None
Larval CNS1 10 of 4 0.86None
Larval Salivary gland2 00 of 4 1.04None
Larval midgut7 20 of 4 4.04None
Larval tubule3 10 of 4 2.00None
Larval hindgut0 00 of 4 0.44None
Larval fat body3 00 of 4 1.60None
Larval trachea2 20 of 4 1.29None
Larval carcass3 10 of 4 1.96None
S2 cells (growing)2 10 of 4 1.33None
Whole fly2 10 of 4

Looking for CG31741-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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