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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31742-RA through 18771 annotations produced 1 hits


AE003657 - proteasome beta subunit (CG31742):

Annotation Number : CG31742
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051742
Gbrowse : chr2L:17990498-17991338 (+) // 100.0 //
Probeset : 1635607_at
Accessions : protein= NP_724081;, nucleotide= NM_165234;
Pathway : 0000502 // proteasome complex // inferred from sequence or structural similarity /// 0000502 // proteasome complex // in
Interpro : 0004175 // endopeptidase activity // inferred from sequence or structural similarity /// 0004175 // endopeptidase activi
FlyMine data for FBgn0051742.
VDRC has 1 RNAi stocks for FBgn0051742 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye0 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.30Down
Salivary gland11 ± 30 of 4 1.02None
Crop0 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 10 of 4 0.10Down
Heart0 ± 00 of 4 0.06Down
Fat body1 ± 10 of 4 0.12Down
Ovary0 ± 00 of 4 0.10Down
Testis205 ± 64 of 418.80Up
Male accessory glands0 ± 00 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.19Down
Mated spermatheca1 ± 10 of 4 0.17Down
Adult carcass0 ± 00 of 4 0.10Down
Larval CNS0 ± 10 of 4 0.09Down
Larval Salivary gland1 ± 00 of 4 0.11Down
Larval midgut0 ± 00 of 4 0.08Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.07Down
Larval fat body33 ± 153 of 4 3.00None
Larval trachea0 ± 00 of 4 0.09Down
Larval carcass1 ± 00 of 4 0.15Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly10 ± 02 of 4

Looking for CG31742-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime