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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31755-RA through 18771 annotations produced 1 hits



(CG31755):

Annotation Number : CG31755
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051755
Gbrowse : chr2L:9996931-10002221 (-) // 100.0 //
Probeset : 1631937_at
Accessions : protein= NP_609335;, nucleotide= NM_135491;
Interpro : "0003676 // nucleic acid binding // inferred from electronic annotation /// 0004004 // ATP-dependent RNA helicase activi
FlyMine data for FBgn0051755.
TRiP has 1 RNAi stocks for FBgn0051755 available for purchase.
VDRC has 1 RNAi stocks for FBgn0051755 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 11 of 4 0.10Down
Head10 10 of 4 0.20Down
Eye8 11 of 4 0.16Down
Thoracicoabdominal ganglion10 01 of 4 0.20Down
Salivary gland32 31 of 4 0.63Down
Crop48 24 of 4 1.00None
Midgut9 21 of 4 0.20Down
Tubule7 10 of 4 0.10Down
Hindgut23 24 of 4 0.40Down
Heart4 10 of 4 0.08Down
Fat body12 11 of 4 0.24Down
Ovary188 84 of 4 3.70Up
Testis13 14 of 4 0.30Down
Male accessory glands13 31 of 4 0.30Down
Virgin spermatheca13 22 of 4 0.27Down
Mated spermatheca13 14 of 4 0.26Down
Adult carcass18 23 of 4 0.40Down
Larval CNS10 24 of 4 0.20Down
Larval Salivary gland8 10 of 4 0.16Down
Larval midgut13 33 of 4 0.27Down
Larval tubule11 20 of 4 0.20Down
Larval hindgut9 01 of 4 0.17Down
Larval fat body16 23 of 4 0.30Down
Larval trachea3 20 of 4 0.07Down
Larval carcass9 12 of 4 0.18Down
S2 cells (growing)73 34 of 4 1.43Up
Whole fly51 34 of 4

Looking for CG31755-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime