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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31756-RA through 18771 annotations produced 1 hits



(CG8683):

Annotation Number : CG31756
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031985
Gbrowse : chr2L:8116962-8124001 (-) // 100.0 //
Probeset : 1630764_at
Accessions : protein= NP_001033884;, nucleotide= NM_001038795;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0031985.
BioGrid reports that CG31756 interacts with CG6459 CG7765 .
VDRC has 3 RNAi stocks for FBgn0031985 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain324 ± 54 of 4 2.40Up
Head186 ± 144 of 4 1.40Up
Eye182 ± 184 of 4 1.37None
Thoracicoabdominal ganglion321 ± 74 of 4 2.40Up
Salivary gland487 ± 184 of 4 3.66Up
Crop187 ± 44 of 4 1.40Up
Midgut200 ± 54 of 4 1.50Up
Tubule238 ± 74 of 4 1.80Up
Hindgut198 ± 44 of 4 1.50Up
Heart148 ± 84 of 4 1.11None
Fat body109 ± 164 of 4 0.82None
Ovary147 ± 64 of 4 1.10None
Testis124 ± 54 of 4 0.90None
Male accessory glands486 ± 94 of 4 3.70Up
Virgin spermatheca214 ± 134 of 4 1.61Up
Mated spermatheca260 ± 214 of 4 1.95Up
Adult carcass96 ± 64 of 4 0.70Down
Larval CNS254 ± 154 of 4 1.92Up
Larval Salivary gland632 ± 384 of 4 4.75Up
Larval midgut210 ± 54 of 4 1.58Up
Larval tubule239 ± 24 of 4 1.80Up
Larval hindgut230 ± 34 of 4 1.73Up
Larval fat body97 ± 114 of 4 0.70None
Larval trachea179 ± 84 of 4 1.35Up
Larval carcass149 ± 84 of 4 1.12None
S2 cells (growing)301 ± 104 of 4 2.27Up
Whole fly133 ± 114 of 4

Looking for CG31756-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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