FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG31762-RD through 18771 annotations produced 2 hits

bruno (aret):

Annotation Number : CG31762
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000114
Gbrowse : chr2L:12287224-12311434 (+) // 100.0 //
Probeset : 1627834_a_at
Accessions : protein= NP_001162963; /// NP_723737; /// NP_723738; /// NP_723739; /// NP_723740;, nucleotide= NM_001169492; /// NM_165002; /// NM_165003; /// NM_165004; /// NM_165005;
Pathway : via spliceosome // inferred from mutant phenotype /// 0002121 // inter-male aggressive behavior // inferred from mutant
Interpro : 0005634 // nucleus // inferred by curator /// 0043186 // P granule // inferred from direct assay
FlyMine data for FBgn0000114.
BDGP gene expression has embryonic in situ data for aret: 22 pix of staining in 11 body parts.
BioGrid reports that CG31762 interacts with CG33103 CG4835 CG5099 CG7417 CG7437 CG10901 CG10901 .
TRiP has 3 RNAi stocks for FBgn0000114 available for purchase.
VDRC has 4 RNAi stocks for FBgn0000114 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	89 ± 4	4 of 4	0.10	Down
Head	165 ± 17	4 of 4	0.20	Down
Eye	504 ± 12	4 of 4	0.61	Down
Thoracicoabdominal ganglion	67 ± 2	4 of 4	0.10	Down
Salivary gland	25 ± 6	3 of 4	0.03	Down
Crop	105 ± 1	4 of 4	0.10	Down
Midgut	1 ± 0	0 of 4	0.00	Down
Tubule	20 ± 10	0 of 4	0.00	Down
Hindgut	459 ± 9	4 of 4	0.60	Down
Heart	189 ± 2	4 of 4	0.23	Down
Fat body	317 ± 36	4 of 4	0.39	Down
Ovary	1981 ± 40	4 of 4	2.40	Up
Testis	1368 ± 72	4 of 4	1.70	Up
Male accessory glands	2 ± 1	0 of 4	0.00	Down
Virgin spermatheca	272 ± 10	4 of 4	0.33	Down
Mated spermatheca	347 ± 17	4 of 4	0.42	Down
Adult carcass	242 ± 35	4 of 4	0.30	Down
Larval CNS	66 ± 5	4 of 4	0.08	Down
Larval Salivary gland	12 ± 4	0 of 4	0.02	Down
Larval midgut	5 ± 2	0 of 4	0.01	Down
Larval tubule	6 ± 2	0 of 4	0.00	Down
Larval hindgut	1045 ± 12	4 of 4	1.27	Up
Larval fat body	327 ± 43	4 of 4	0.40	Down
Larval trachea	13 ± 8	3 of 4	0.02	Down
Larval carcass	32 ± 1	4 of 4	0.04	Down
S2 cells (growing)	1 ± 0	0 of 4	0.00	Down
Whole fly	823 ± 28	4 of 4

bruno (aret):

Annotation Number : CG31762
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0000114
Gbrowse : chr2L:12287224-12311434 (+) // 100.0 //
Probeset : 1625076_at
Accessions : protein= NP_001162963; /// NP_723737; /// NP_723738; /// NP_723739; /// NP_723740;, nucleotide= NM_001169492; /// NM_165002; /// NM_165003; /// NM_165004; /// NM_165005;
Pathway : via spliceosome // inferred from mutant phenotype /// 0002121 // inter-male aggressive behavior // inferred from mutant
Interpro : 0005634 // nucleus // inferred by curator /// 0043186 // P granule // inferred from direct assay
FlyMine data for FBgn0000114.
BDGP gene expression has embryonic in situ data for aret: 22 pix of staining in 11 body parts.
BioGrid reports that CG31762 interacts with CG33103 CG4835 CG5099 CG7417 CG7437 CG10901 CG10901 .
TRiP has 3 RNAi stocks for FBgn0000114 available for purchase.
VDRC has 4 RNAi stocks for FBgn0000114 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	70 ± 4	4 of 4	0.10	Down
Head	206 ± 19	4 of 4	0.20	Down
Eye	586 ± 26	4 of 4	0.63	Down
Thoracicoabdominal ganglion	52 ± 4	4 of 4	0.10	Down
Salivary gland	26 ± 1	4 of 4	0.03	Down
Crop	151 ± 6	4 of 4	0.20	Down
Midgut	3 ± 0	0 of 4	0.00	Down
Tubule	20 ± 6	3 of 4	0.00	Down
Hindgut	667 ± 14	4 of 4	0.70	Down
Heart	160 ± 13	4 of 4	0.17	Down
Fat body	544 ± 72	4 of 4	0.59	Down
Ovary	2445 ± 32	4 of 4	2.60	Up
Testis	132 ± 5	4 of 4	0.10	Down
Male accessory glands	4 ± 2	1 of 4	0.00	Down
Virgin spermatheca	351 ± 8	4 of 4	0.38	Down
Mated spermatheca	410 ± 22	4 of 4	0.44	Down
Adult carcass	239 ± 42	4 of 4	0.30	Down
Larval CNS	63 ± 8	4 of 4	0.07	Down
Larval Salivary gland	11 ± 2	4 of 4	0.01	Down
Larval midgut	9 ± 4	3 of 4	0.01	Down
Larval tubule	11 ± 1	4 of 4	0.00	Down
Larval hindgut	1305 ± 45	4 of 4	1.41	Up
Larval fat body	358 ± 33	4 of 4	0.40	Down
Larval trachea	8 ± 4	4 of 4	0.01	Down
Larval carcass	46 ± 2	4 of 4	0.05	Down
S2 cells (growing)	2 ± 0	0 of 4	0.00	Down
Whole fly	927 ± 66	4 of 4

Looking for CG31762-RD. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720