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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31764-RB through 18771 annotations produced 1 hits



virus-induced RNA 1 (vir-1):

Annotation Number : CG31764
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043841
Gbrowse : chr2L:12403261-12423421 (-) // 100.0 //
Probeset : 1625012_s_at
Accessions : protein= NP_001033901; /// NP_723746; /// NP_723747; /// NP_995688;, nucleotide= NM_001038812; /// NM_165010; /// NM_165011; /// NM_205966;
FlyMine data for FBgn0043841.
BioGrid reports that CG31764 interacts with CG4087 CG4871 CG4938 CG5836 CG5876 CG6058 CG7171 CG7488 CG8065 CG8697 CG9368 CG9699 .
VDRC has 1 RNAi stocks for FBgn0043841 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain693 ± 794 of 4 4.80Up
Head440 ± 304 of 4 3.00Up
Eye255 ± 144 of 4 1.76None
Thoracicoabdominal ganglion1363 ± 414 of 4 9.40Up
Salivary gland104 ± 104 of 4 0.72None
Crop998 ± 214 of 4 6.90Up
Midgut98 ± 44 of 4 0.70None
Tubule16 ± 12 of 4 0.10Down
Hindgut431 ± 134 of 4 3.00Up
Heart262 ± 434 of 4 1.81None
Fat body35 ± 24 of 4 0.25None
Ovary8 ± 02 of 4 0.10None
Testis36 ± 34 of 4 0.30None
Male accessory glands41 ± 174 of 4 0.30None
Virgin spermatheca57 ± 134 of 4 0.39None
Mated spermatheca333 ± 1174 of 4 2.30None
Adult carcass257 ± 164 of 4 1.80None
Larval CNS497 ± 134 of 4 3.42Up
Larval Salivary gland42 ± 54 of 4 0.29None
Larval midgut63 ± 14 of 4 0.44None
Larval tubule14 ± 12 of 4 0.10None
Larval hindgut327 ± 244 of 4 2.25Up
Larval fat body37 ± 93 of 4 0.30None
Larval trachea1684 ± 4764 of 411.60Up
Larval carcass611 ± 364 of 4 4.21Up
S2 cells (growing)2485 ± 1374 of 417.11Up
Whole fly145 ± 534 of 4

Looking for CG31764-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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