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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31771-RA through 18771 annotations produced 1 hits



(CG31771):

Annotation Number : CG31771
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028873
Gbrowse : chr2L:14039842-14043164 (-) // 100.0 //
Probeset : 1628130_at
Accessions : protein= NP_723863;, nucleotide= NM_165080;
FlyMine data for FBgn0028873.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.50None
Head3 ± 10 of 4 1.70None
Eye3 ± 10 of 4 1.65None
Thoracicoabdominal ganglion4 ± 10 of 4 2.00None
Salivary gland9 ± 41 of 4 4.28None
Crop5 ± 11 of 4 2.50None
Midgut4 ± 10 of 4 2.00None
Tubule1 ± 00 of 4 0.70None
Hindgut2 ± 10 of 4 1.20None
Heart2 ± 10 of 4 1.20None
Fat body3 ± 40 of 4 1.74None
Ovary2 ± 10 of 4 1.30None
Testis1 ± 00 of 4 0.70None
Male accessory glands2 ± 10 of 4 1.20None
Virgin spermatheca4 ± 10 of 4 1.88None
Mated spermatheca1 ± 00 of 4 0.58None
Adult carcass2 ± 00 of 4 1.00None
Larval CNS2 ± 10 of 4 0.95None
Larval Salivary gland4 ± 20 of 4 2.05None
Larval midgut11 ± 20 of 4 5.24Up
Larval tubule1 ± 00 of 4 0.60None
Larval hindgut2 ± 10 of 4 1.31None
Larval fat body5 ± 10 of 4 2.30None
Larval trachea0 ± 00 of 4 0.30None
Larval carcass6 ± 10 of 4 3.11Up
S2 cells (growing)5 ± 00 of 4 2.50Up
Whole fly2 ± 00 of 4

Looking for CG31771-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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