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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31773-RA through 18771 annotations produced 1 hits



(CG31773):

Annotation Number : CG31773
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051773
Gbrowse : chr2L:3911789-3914288 (-) // 100.0 //
Probeset : 1634014_at
Accessions : protein= NP_722953;, nucleotide= NM_164568;
Interpro : 0004326 // tetrahydrofolylpolyglutamate synthase activity // inferred from sequence or structural similarity /// 0004326
FlyMine data for FBgn0051773.
VDRC has 1 RNAi stocks for FBgn0051773 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye2 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion2 ± 11 of 4 0.00Down
Salivary gland1 ± 00 of 4 0.03Down
Crop2 ± 10 of 4 0.00Down
Midgut3 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.00Down
Heart4 ± 10 of 4 0.07Down
Fat body1 ± 00 of 4 0.02Down
Ovary0 ± 00 of 4 0.00Down
Testis703 ± 124 of 412.60Up
Male accessory glands5 ± 10 of 4 0.10Down
Virgin spermatheca4 ± 00 of 4 0.08Down
Mated spermatheca2 ± 00 of 4 0.05Down
Adult carcass8 ± 40 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.04Down
Larval midgut3 ± 10 of 4 0.06Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut2 ± 00 of 4 0.04Down
Larval fat body48 ± 233 of 4 0.90None
Larval trachea3 ± 51 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.02Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly55 ± 14 of 4

Looking for CG31773-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime