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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG31778-RA through 18771 annotations produced 1 hits



(CG31778):

Annotation Number : CG31778
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051778
Gbrowse : chr2L:3704105-3705462 (-) // 100.0 //
Probeset : 1636682_at
Accessions : protein= NP_722932;, nucleotide= NM_164549;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation
FlyMine data for FBgn0051778.
BDGP gene expression has embryonic in situ data for CG31778: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0051778 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 04 of 4 0.10Down
Head369 ± 104 of 4 4.60Up
Eye220 ± 444 of 4 2.75Up
Thoracicoabdominal ganglion8 ± 13 of 4 0.10Down
Salivary gland12 ± 22 of 4 0.15Down
Crop73 ± 54 of 4 0.90None
Midgut1 ± 10 of 4 0.00Down
Tubule10 ± 21 of 4 0.10Down
Hindgut92 ± 84 of 4 1.20None
Heart455 ± 334 of 4 5.67Up
Fat body694 ± 894 of 4 8.65Up
Ovary1 ± 00 of 4 0.00Down
Testis4 ± 02 of 4 0.10Down
Male accessory glands8 ± 10 of 4 0.10Down
Virgin spermatheca646 ± 414 of 4 8.05Up
Mated spermatheca656 ± 174 of 4 8.18Up
Adult carcass308 ± 154 of 4 3.80Up
Larval CNS3 ± 22 of 4 0.05Down
Larval Salivary gland32 ± 24 of 4 0.41Down
Larval midgut6 ± 10 of 4 0.09Down
Larval tubule15 ± 24 of 4 0.20Down
Larval hindgut31 ± 34 of 4 0.39Down
Larval fat body5175 ± 6114 of 464.50Up
Larval trachea23 ± 124 of 4 0.29Down
Larval carcass25 ± 44 of 4 0.32Down
S2 cells (growing)116 ± 114 of 4 1.45Up
Whole fly80 ± 54 of 4

Looking for CG31778-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime