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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31814-RA through 18771 annotations produced 1 hits


Annotation Number : CG31814
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0051814
Gbrowse : chr2L:13676859-13717310 (-) // 100.0 //
Probeset : 1633768_at
Accessions : protein= NP_723828;, nucleotide= NM_165049;
FlyMine data for FBgn0051814.
Homophila reports that CG31814 is a close match (3e-15) to human gene CMD1G;EOMFC;HMERF;LGMD2J;MPRM;TMD;TTN (NP_596869), a gene associated with Cardiomyopathy, dilated, 1G, 604145 (3);Cardiomyopathy, familial hypertrophic, 9 (3);Muscular dystrophy, limb-girdle, type 2J, 608807 (3);Myopathy, early-onset, with fatal cardiomyopathy, 611705 (3);Myopathy, proximal, with early respiratory muscle involvement, 603689 (3);Tibial muscular dystrophy, tardive, 600334 (3).
TRiP has 1 RNAi stocks for FBgn0051814 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 74 of 413.60Up
Head17 24 of 4 2.80Up
Eye2 01 of 4 0.46None
Thoracicoabdominal ganglion50 14 of 4 8.10Up
Salivary gland6 30 of 4 1.07None
Crop5 11 of 4 0.90None
Midgut1 00 of 4 0.20Down
Tubule2 00 of 4 0.40Down
Hindgut2 00 of 4 0.40None
Heart2 00 of 4 0.33None
Fat body5 22 of 4 0.80None
Ovary0 00 of 4 0.10Down
Testis0 00 of 4 0.10Down
Male accessory glands3 10 of 4 0.50None
Virgin spermatheca2 00 of 4 0.35None
Mated spermatheca2 10 of 4 0.40None
Adult carcass5 00 of 4 0.90None
Larval CNS34 64 of 4 5.42Up
Larval Salivary gland2 10 of 4 0.31None
Larval midgut0 00 of 4 0.11Down
Larval tubule2 00 of 4 0.40None
Larval hindgut2 00 of 4 0.32None
Larval fat body2 00 of 4 0.40None
Larval trachea1 00 of 4 0.20Down
Larval carcass2 11 of 4 0.44None
S2 cells (growing)1 00 of 4 0.20Down
Whole fly6 12 of 4

Looking for CG31814-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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