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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG31819-RA through 18771 annotations produced 1 hits


Annotation Number : CG31819
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028893
Gbrowse : chr2L:16211458-16213307 (+) // 100.0 //
Probeset : 1627444_at
Accessions : protein= NP_723954;, nucleotide= NM_165148;
FlyMine data for FBgn0028893.
BDGP gene expression has embryonic in situ data for BG:DS02795.3: 2 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0028893 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.00Down
Head7 20 of 4 0.10Down
Eye4 20 of 4 0.05Down
Thoracicoabdominal ganglion7 20 of 4 0.10Down
Salivary gland14 41 of 4 0.18Down
Crop5 10 of 4 0.10Down
Midgut6 10 of 4 0.10Down
Tubule5 10 of 4 0.10Down
Hindgut4 10 of 4 0.10Down
Heart2 00 of 4 0.03Down
Fat body7 40 of 4 0.10Down
Ovary1 00 of 4 0.00Down
Testis989 94 of 412.20Up
Male accessory glands7 21 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.03Down
Mated spermatheca5 10 of 4 0.07Down
Adult carcass9 20 of 4 0.10Down
Larval CNS5 10 of 4 0.06Down
Larval Salivary gland2 10 of 4 0.03Down
Larval midgut4 20 of 4 0.05Down
Larval tubule4 10 of 4 0.10Down
Larval hindgut4 10 of 4 0.06Down
Larval fat body84 413 of 4 1.00None
Larval trachea5 71 of 4 0.06Down
Larval carcass1 00 of 4 0.02Down
S2 cells (growing)3 00 of 4 0.05Down
Whole fly80 64 of 4

Looking for CG31819-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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