Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG3182-RA through 18771 annotations produced 1 hits



seizure potassium channel (sei):

Annotation Number : CG3182
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003353
Gbrowse : chr2R:19936727-19940558 (+) // 99.85 //
Probeset : 1629418_s_at
Accessions : protein= NP_476713; /// NP_726408;, nucleotide= NM_057365; /// NM_166653;
Pathway : 0008076 // voltage-gated potassium channel complex // non-traceable author statement /// 0016020 // membrane // inferred
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005249 // voltage-gated potassium channel ac
FlyMine data for FBgn0003353.
Homophila reports that CG3182 is a close match (2e-14) to human gene CNCG2;CNCG3L;CNGB1 (NP_001288), a gene associated with Retinitis pigmentosa, autosomal recessive, 268000 (3).
TRiP has 2 RNAi stocks for FBgn0003353 available for purchase.
VDRC has 2 RNAi stocks for FBgn0003353 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain453 ± 164 of 4 9.90Up
Head137 ± 54 of 4 3.00Up
Eye198 ± 114 of 4 4.34Up
Thoracicoabdominal ganglion466 ± 84 of 410.20Up
Salivary gland7 ± 30 of 4 0.16Down
Crop8 ± 10 of 4 0.20Down
Midgut11 ± 10 of 4 0.20Down
Tubule4 ± 00 of 4 0.10Down
Hindgut5 ± 20 of 4 0.10Down
Heart47 ± 14 of 4 1.04None
Fat body61 ± 124 of 4 1.34None
Ovary58 ± 44 of 4 1.30None
Testis27 ± 14 of 4 0.60Down
Male accessory glands15 ± 21 of 4 0.30Down
Virgin spermatheca59 ± 44 of 4 1.29None
Mated spermatheca91 ± 104 of 4 2.00Up
Adult carcass35 ± 34 of 4 0.80None
Larval CNS143 ± 54 of 4 3.14Up
Larval Salivary gland11 ± 11 of 4 0.24Down
Larval midgut3 ± 11 of 4 0.08Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut5 ± 10 of 4 0.12Down
Larval fat body12 ± 42 of 4 0.30Down
Larval trachea30 ± 74 of 4 0.67Down
Larval carcass11 ± 02 of 4 0.26Down
S2 cells (growing)42 ± 24 of 4 0.94None
Whole fly45 ± 34 of 4

Looking for CG3182-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime